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Items: 1 to 20 of 76

1.

Protein complex prediction based on k-connected subgraphs in protein interaction network.

Habibi M, Eslahchi C, Wong L.

BMC Syst Biol. 2010 Sep 16;4:129. doi: 10.1186/1752-0509-4-129.

2.

Detection of protein complexes using a protein ranking algorithm.

Zaki N, Berengueres J, Efimov D.

Proteins. 2012 Oct;80(10):2459-68. doi: 10.1002/prot.24130. Epub 2012 Jul 7.

PMID:
22685080
3.

Mining Dense Overlapping Subgraphs in weighted protein-protein interaction networks.

Lee AJ, Lin MC, Hsu CM.

Biosystems. 2011 Mar;103(3):392-9. doi: 10.1016/j.biosystems.2010.11.010. Epub 2010 Nov 21.

PMID:
21095218
4.

Prediction of heterodimeric protein complexes from weighted protein-protein interaction networks using novel features and kernel functions.

Ruan P, Hayashida M, Maruyama O, Akutsu T.

PLoS One. 2013 Jun 11;8(6):e65265. doi: 10.1371/journal.pone.0065265. Print 2013.

5.

PCDq: human protein complex database with quality index which summarizes different levels of evidences of protein complexes predicted from h-invitational protein-protein interactions integrative dataset.

Kikugawa S, Nishikata K, Murakami K, Sato Y, Suzuki M, Altaf-Ul-Amin M, Kanaya S, Imanishi T.

BMC Syst Biol. 2012;6 Suppl 2:S7. doi: 10.1186/1752-0509-6-S2-S7. Epub 2012 Dec 12.

6.

Identifying protein complexes based on density and modularity in protein-protein interaction network.

Ren J, Wang J, Li M, Wang L.

BMC Syst Biol. 2013;7 Suppl 4:S12. doi: 10.1186/1752-0509-7-S4-S12. Epub 2013 Oct 23.

7.

Supervised maximum-likelihood weighting of composite protein networks for complex prediction.

Yong CH, Liu G, Chua HN, Wong L.

BMC Syst Biol. 2012;6 Suppl 2:S13. doi: 10.1186/1752-0509-6-S2-S13. Epub 2012 Dec 12.

8.

From Function to Interaction: A New Paradigm for Accurately Predicting Protein Complexes Based on Protein-to-Protein Interaction Networks.

Xu B, Guan J.

IEEE/ACM Trans Comput Biol Bioinform. 2014 Jul-Aug;11(4):616-27. doi: 10.1109/TCBB.2014.2306825.

PMID:
26356332
9.

Protein complex prediction with RNSC.

King AD, Pržulj N, Jurisica I.

Methods Mol Biol. 2012;804:297-312. doi: 10.1007/978-1-61779-361-5_16.

PMID:
22144160
10.

Complex discovery from weighted PPI networks.

Liu G, Wong L, Chua HN.

Bioinformatics. 2009 Aug 1;25(15):1891-7. doi: 10.1093/bioinformatics/btp311. Epub 2009 May 12.

PMID:
19435747
11.

Protein complex prediction based on simultaneous protein interaction network.

Jung SH, Hyun B, Jang WH, Hur HY, Han DS.

Bioinformatics. 2010 Feb 1;26(3):385-91. doi: 10.1093/bioinformatics/btp668. Epub 2009 Dec 4.

PMID:
19965885
12.

Using indirect protein-protein interactions for protein complex prediction.

Chua HN, Ning K, Sung WK, Leong HW, Wong L.

J Bioinform Comput Biol. 2008 Jun;6(3):435-66.

PMID:
18574858
13.

Discovering protein complexes in protein interaction networks via exploring the weak ties effect.

Ma X, Gao L.

BMC Syst Biol. 2012;6 Suppl 1:S6. doi: 10.1186/1752-0509-6-S1-S6. Epub 2012 Jul 16.

14.

Protein complex prediction via verifying and reconstructing the topology of domain-domain interactions.

Ozawa Y, Saito R, Fujimori S, Kashima H, Ishizaka M, Yanagawa H, Miyamoto-Sato E, Tomita M.

BMC Bioinformatics. 2010 Jun 28;11:350. doi: 10.1186/1471-2105-11-350.

15.

Identification of human protein complexes from local sub-graphs of protein-protein interaction network based on random forest with topological structure features.

Li ZC, Lai YH, Chen LL, Zhou X, Dai Z, Zou XY.

Anal Chim Acta. 2012 Mar 9;718:32-41. doi: 10.1016/j.aca.2011.12.069. Epub 2012 Jan 9.

PMID:
22305895
16.

A max-flow-based approach to the identification of protein complexes using protein interaction and microarray data.

Feng J, Jiang R, Jiang T.

IEEE/ACM Trans Comput Biol Bioinform. 2011 May-Jun;8(3):621-34. doi: 10.1109/TCBB.2010.78.

PMID:
20733237
17.

Protein complex prediction via cost-based clustering.

King AD, Przulj N, Jurisica I.

Bioinformatics. 2004 Nov 22;20(17):3013-20. Epub 2004 Jun 4.

PMID:
15180928
18.

Identifying the topology of protein complexes from affinity purification assays.

Friedel CC, Zimmer R.

Bioinformatics. 2009 Aug 15;25(16):2140-6. doi: 10.1093/bioinformatics/btp353. Epub 2009 Jun 8.

19.

Generating protein interaction maps from incomplete data: application to fold assignment.

Lappe M, Park J, Niggemann O, Holm L.

Bioinformatics. 2001;17 Suppl 1:S149-56.

PMID:
11473004
20.

Identification of core-attachment complexes based on maximal frequent patterns in protein-protein interaction networks.

Yu L, Gao L, Kong C.

Proteomics. 2011 Oct;11(19):3826-34. doi: 10.1002/pmic.201100194. Epub 2011 Aug 23.

PMID:
21761565

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