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Items: 1 to 20 of 102


Microbial community resemblance methods differ in their ability to detect biologically relevant patterns.

Kuczynski J, Liu Z, Lozupone C, McDonald D, Fierer N, Knight R.

Nat Methods. 2010 Oct;7(10):813-9. doi: 10.1038/nmeth.1499.


Using network analysis to explore co-occurrence patterns in soil microbial communities.

Barberán A, Bates ST, Casamayor EO, Fierer N.

ISME J. 2012 Feb;6(2):343-51. doi: 10.1038/ismej.2011.119. Erratum in: ISME J. 2014 Apr;8(4):952.


Species divergence and the measurement of microbial diversity.

Lozupone CA, Knight R.

FEMS Microbiol Rev. 2008 Jul;32(4):557-78. doi: 10.1111/j.1574-6976.2008.00111.x. Review.


Rethinking microbial diversity analysis in the high throughput sequencing era.

Lemos LN, Fulthorpe RR, Triplett EW, Roesch LF.

J Microbiol Methods. 2011 Jul;86(1):42-51. doi: 10.1016/j.mimet.2011.03.014.


Phylogenetic molecular ecological network of soil microbial communities in response to elevated CO2.

Zhou J, Deng Y, Luo F, He Z, Yang Y.

MBio. 2011 Jul 26;2(4). pii: e00122-11. doi: 10.1128/mBio.00122-11.


Shifts in microbial community structure along an ecological gradient of hypersaline soils and sediments.

Hollister EB, Engledow AS, Hammett AJ, Provin TL, Wilkinson HH, Gentry TJ.

ISME J. 2010 Jun;4(6):829-38. doi: 10.1038/ismej.2010.3.


Distinct soil bacterial communities revealed under a diversely managed agroecosystem.

Shange RS, Ankumah RO, Ibekwe AM, Zabawa R, Dowd SE.

PLoS One. 2012;7(7):e40338. doi: 10.1371/journal.pone.0040338.


Does urbanization shape bacterial community composition in urban park soils? A case study in 16 representative Chinese cities based on the pyrosequencing method.

Xu HJ, Li S, Su JQ, Nie S, Gibson V, Li H, Zhu YG.

FEMS Microbiol Ecol. 2014 Jan;87(1):182-92. doi: 10.1111/1574-6941.12215.


Contrasting spatial patterns and ecological attributes of soil bacterial and archaeal taxa across a landscape.

Constancias F, Saby NP, Terrat S, Dequiedt S, Horrigue W, Nowak V, Guillemin JP, Biju-Duval L, Chemidlin Prévost-Bouré N, Ranjard L.

Microbiologyopen. 2015 Jun;4(3):518-31. doi: 10.1002/mbo3.256.


A survey of the methods for the characterization of microbial consortia and communities.

Spiegelman D, Whissell G, Greer CW.

Can J Microbiol. 2005 May;51(5):355-86. Review.


Evidence from GC-TRFLP that bacterial communities in soil are lognormally distributed.

Doroghazi JR, Buckley DH.

PLoS One. 2008 Aug 6;3(8):e2910. doi: 10.1371/journal.pone.0002910.


Altitudinal distribution patterns of soil bacterial and archaeal communities along mt. Shegyla on the Tibetan Plateau.

Wang JT, Cao P, Hu HW, Li J, Han LL, Zhang LM, Zheng YM, He JZ.

Microb Ecol. 2015 Jan;69(1):135-45. doi: 10.1007/s00248-014-0465-7.


Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients.

Fierer N, Lauber CL, Ramirez KS, Zaneveld J, Bradford MA, Knight R.

ISME J. 2012 May;6(5):1007-17. doi: 10.1038/ismej.2011.159.


Profiling microbial community structures across six large oilfields in China and the potential role of dominant microorganisms in bioremediation.

Sun W, Li J, Jiang L, Sun Z, Fu M, Peng X.

Appl Microbiol Biotechnol. 2015 Oct;99(20):8751-64. doi: 10.1007/s00253-015-6748-1.


Horizon-specific bacterial community composition of German grassland soils, as revealed by pyrosequencing-based analysis of 16S rRNA genes.

Will C, Thürmer A, Wollherr A, Nacke H, Herold N, Schrumpf M, Gutknecht J, Wubet T, Buscot F, Daniel R.

Appl Environ Microbiol. 2010 Oct;76(20):6751-9. doi: 10.1128/AEM.01063-10.


Impact of Phanerochaete chrysosporium on the Functional Diversity of Bacterial Communities Associated with Decaying Wood.

Hervé V, Ketter E, Pierrat JC, Gelhaye E, Frey-Klett P.

PLoS One. 2016 Jan 29;11(1):e0147100. doi: 10.1371/journal.pone.0147100.


Comparative molecular analysis of chemolithoautotrophic bacterial diversity and community structure from coastal saline soils, Gujarat, India.

Yousuf B, Sanadhya P, Keshri J, Jha B.

BMC Microbiol. 2012 Jul 26;12:150. doi: 10.1186/1471-2180-12-150.

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