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Items: 1 to 20 of 319

1.

Relations as patterns: bridging the gap between OBO and OWL.

Hoehndorf R, Oellrich A, Dumontier M, Kelso J, Rebholz-Schuhmann D, Herre H.

BMC Bioinformatics. 2010 Aug 31;11:441. doi: 10.1186/1471-2105-11-441.

2.

Unintended consequences of existential quantifications in biomedical ontologies.

Boeker M, Tudose I, Hastings J, Schober D, Schulz S.

BMC Bioinformatics. 2011 Nov 24;12:456. doi: 10.1186/1471-2105-12-456.

3.

Mapping between the OBO and OWL ontology languages.

Tirmizi SH, Aitken S, Moreira DA, Mungall C, Sequeda J, Shah NH, Miranker DP.

J Biomed Semantics. 2011 Mar 7;2 Suppl 1:S3. doi: 10.1186/2041-1480-2-S1-S3.

4.

OBO to OWL: a protege OWL tab to read/save OBO ontologies.

Moreira DA, Musen MA.

Bioinformatics. 2007 Jul 15;23(14):1868-70. Epub 2007 May 12.

PMID:
17496317
5.

A common layer of interoperability for biomedical ontologies based on OWL EL.

Hoehndorf R, Dumontier M, Oellrich A, Wimalaratne S, Rebholz-Schuhmann D, Schofield P, Gkoutos GV.

Bioinformatics. 2011 Apr 1;27(7):1001-8. doi: 10.1093/bioinformatics/btr058. Epub 2011 Feb 21.

6.

OBO Explorer: an editor for Open Biomedical Ontologies in OWL.

Aitken S, Chen Y, Bard J.

Bioinformatics. 2008 Feb 1;24(3):443-4. Epub 2007 Dec 1.

PMID:
18056066
7.

Semi-automated ontology generation within OBO-Edit.

Wächter T, Schroeder M.

Bioinformatics. 2010 Jun 15;26(12):i88-96. doi: 10.1093/bioinformatics/btq188.

8.

Aber-OWL: a framework for ontology-based data access in biology.

Hoehndorf R, Slater L, Schofield PN, Gkoutos GV.

BMC Bioinformatics. 2015 Jan 28;16:26. doi: 10.1186/s12859-015-0456-9.

9.

Reasoning with bio-ontologies: using relational closure rules to enable practical querying.

Blondé W, Mironov V, Venkatesan A, Antezana E, De Baets B, Kuiper M.

Bioinformatics. 2011 Jun 1;27(11):1562-8. doi: 10.1093/bioinformatics/btr164. Epub 2011 Apr 5.

PMID:
21471019
10.

The Foundational Model of Anatomy in OWL 2 and its use.

Golbreich C, Grosjean J, Darmoni SJ.

Artif Intell Med. 2013 Feb;57(2):119-32. doi: 10.1016/j.artmed.2012.11.002. Epub 2012 Dec 28.

PMID:
23273493
11.

A UML profile for the OBO relation ontology.

Guardia GD, Vêncio RZ, de Farias CR.

BMC Genomics. 2012;13 Suppl 5:S3. doi: 10.1186/1471-2164-13-S5-S3. Epub 2012 Oct 19.

12.
13.

Spatial location and its relevance for terminological inferences in bio-ontologies.

Schulz S, Markó K, Hahn U.

BMC Bioinformatics. 2007 Apr 20;8:134.

14.

Interoperability between biomedical ontologies through relation expansion, upper-level ontologies and automatic reasoning.

Hoehndorf R, Dumontier M, Oellrich A, Rebholz-Schuhmann D, Schofield PN, Gkoutos GV.

PLoS One. 2011;6(7):e22006. doi: 10.1371/journal.pone.0022006. Epub 2011 Jul 18.

15.

Regular paths in SparQL: querying the NCI Thesaurus.

Detwiler LT, Suciu D, Brinkley JF.

AMIA Annu Symp Proc. 2008 Nov 6:161-5.

16.

A method exploiting syntactic patterns and the UMLS semantics for aligning biomedical ontologies: the case of OBO disease ontologies.

Marquet G, Mosser J, Burgun A.

Int J Med Inform. 2007 Dec;76 Suppl 3:S353-61. Epub 2007 May 22.

PMID:
17517532
17.

Survey-based naming conventions for use in OBO Foundry ontology development.

Schober D, Smith B, Lewis SE, Kusnierczyk W, Lomax J, Mungall C, Taylor CF, Rocca-Serra P, Sansone SA.

BMC Bioinformatics. 2009 Apr 27;10:125. doi: 10.1186/1471-2105-10-125.

18.

Understanding and using the meaning of statements in a bio-ontology: recasting the Gene Ontology in OWL.

Aranguren ME, Bechhofer S, Lord P, Sattler U, Stevens R.

BMC Bioinformatics. 2007 Feb 20;8:57. Review.

19.

A Process for the Representation of openEHR ADL Archetypes in OWL Ontologies.

Porn AM, Peres LM, Didonet Del Fabro M.

Stud Health Technol Inform. 2015;216:827-31.

PMID:
26262167
20.

A top-level ontology of functions and its application in the Open Biomedical Ontologies.

Burek P, Hoehndorf R, Loebe F, Visagie J, Herre H, Kelso J.

Bioinformatics. 2006 Jul 15;22(14):e66-73.

PMID:
16873523

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