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Items: 1 to 20 of 177

1.

Bayesian random local clocks, or one rate to rule them all.

Drummond AJ, Suchard MA.

BMC Biol. 2010 Aug 31;8:114. doi: 10.1186/1741-7007-8-114.

2.

Model averaging and Bayes factor calculation of relaxed molecular clocks in Bayesian phylogenetics.

Li WL, Drummond AJ.

Mol Biol Evol. 2012 Feb;29(2):751-61. doi: 10.1093/molbev/msr232. Epub 2011 Sep 22.

3.

A dirichlet process prior for estimating lineage-specific substitution rates.

Heath TA, Holder MT, Huelsenbeck JP.

Mol Biol Evol. 2012 Mar;29(3):939-55. doi: 10.1093/molbev/msr255. Epub 2011 Nov 2.

4.

Rate variation and estimation of divergence times using strict and relaxed clocks.

Brown RP, Yang Z.

BMC Evol Biol. 2011 Sep 26;11:271. doi: 10.1186/1471-2148-11-271.

5.

Approximate likelihood calculation on a phylogeny for Bayesian estimation of divergence times.

dos Reis M, Yang Z.

Mol Biol Evol. 2011 Jul;28(7):2161-72. doi: 10.1093/molbev/msr045. Epub 2011 Feb 10.

PMID:
21310946
6.

Bayesian phylogenetics with BEAUti and the BEAST 1.7.

Drummond AJ, Suchard MA, Xie D, Rambaut A.

Mol Biol Evol. 2012 Aug;29(8):1969-73. doi: 10.1093/molbev/mss075. Epub 2012 Feb 25.

7.

Bayesian dating of shallow phylogenies with a relaxed clock.

Brown RP, Yang Z.

Syst Biol. 2010 Mar;59(2):119-31. doi: 10.1093/sysbio/syp082. Epub 2009 Dec 10.

PMID:
20525625
8.

Relaxed molecular clocks, the bias-variance trade-off, and the quality of phylogenetic inference.

Wertheim JO, Sanderson MJ, Worobey M, Bjork A.

Syst Biol. 2010 Jan;59(1):1-8. doi: 10.1093/sysbio/syp072. Epub 2009 Oct 13.

9.

BEAST: Bayesian evolutionary analysis by sampling trees.

Drummond AJ, Rambaut A.

BMC Evol Biol. 2007 Nov 8;7:214.

10.

Relaxed phylogenetics and dating with confidence.

Drummond AJ, Ho SY, Phillips MJ, Rambaut A.

PLoS Biol. 2006 May;4(5):e88. Epub 2006 Mar 14.

11.

Exploring new dating approaches for parasites: the worldwide Apodanthaceae (Cucurbitales) as an example.

Bellot S, Renner SS.

Mol Phylogenet Evol. 2014 Nov;80:1-10. doi: 10.1016/j.ympev.2014.07.005. Epub 2014 Jul 22.

PMID:
25057774
12.

Molecular-clock methods for estimating evolutionary rates and timescales.

Ho SY, DuchĂȘne S.

Mol Ecol. 2014 Dec;23(24):5947-65. doi: 10.1111/mec.12953. Epub 2014 Oct 30. Review.

PMID:
25290107
13.

A compound poisson process for relaxing the molecular clock.

Huelsenbeck JP, Larget B, Swofford D.

Genetics. 2000 Apr;154(4):1879-92.

14.

Tail paradox, partial identifiability, and influential priors in Bayesian branch length inference.

Rannala B, Zhu T, Yang Z.

Mol Biol Evol. 2012 Jan;29(1):325-35. doi: 10.1093/molbev/msr210. Epub 2011 Sep 2.

PMID:
21890479
15.
16.

Characterization of the uncertainty of divergence time estimation under relaxed molecular clock models using multiple loci.

Zhu T, Dos Reis M, Yang Z.

Syst Biol. 2015 Mar;64(2):267-80. doi: 10.1093/sysbio/syu109. Epub 2014 Dec 11.

17.

Birth-death prior on phylogeny and speed dating.

Akerborg O, Sennblad B, Lagergren J.

BMC Evol Biol. 2008 Mar 4;8:77. doi: 10.1186/1471-2148-8-77.

18.

Modelling heterotachy in phylogenetic inference by reversible-jump Markov chain Monte Carlo.

Pagel M, Meade A.

Philos Trans R Soc Lond B Biol Sci. 2008 Dec 27;363(1512):3955-64. doi: 10.1098/rstb.2008.0178.

19.

Accurate model selection of relaxed molecular clocks in bayesian phylogenetics.

Baele G, Li WL, Drummond AJ, Suchard MA, Lemey P.

Mol Biol Evol. 2013 Feb;30(2):239-43. doi: 10.1093/molbev/mss243. Epub 2012 Oct 22.

20.

Novel non-parametric models to estimate evolutionary rates and divergence times from heterochronous sequence data.

Fourment M, Holmes EC.

BMC Evol Biol. 2014 Jul 24;14:163. doi: 10.1186/s12862-014-0163-6.

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