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Items: 1 to 20 of 90

1.

TAM: a method for enrichment and depletion analysis of a microRNA category in a list of microRNAs.

Lu M, Shi B, Wang J, Cao Q, Cui Q.

BMC Bioinformatics. 2010 Aug 9;11:419. doi: 10.1186/1471-2105-11-419.

2.

Inferring the human microRNA functional similarity and functional network based on microRNA-associated diseases.

Wang D, Wang J, Lu M, Song F, Cui Q.

Bioinformatics. 2010 Jul 1;26(13):1644-50. doi: 10.1093/bioinformatics/btq241. Epub 2010 May 3.

PMID:
20439255
3.

Altered expression of microRNAs in the myocardium of rats with acute myocardial infarction.

Shi B, Guo Y, Wang J, Gao W.

BMC Cardiovasc Disord. 2010 Mar 1;10:11. doi: 10.1186/1471-2261-10-11.

4.

miRExpress: analyzing high-throughput sequencing data for profiling microRNA expression.

Wang WC, Lin FM, Chang WC, Lin KY, Huang HD, Lin NS.

BMC Bioinformatics. 2009 Oct 12;10:328. doi: 10.1186/1471-2105-10-328.

5.

TransmiR: a transcription factor-microRNA regulation database.

Wang J, Lu M, Qiu C, Cui Q.

Nucleic Acids Res. 2010 Jan;38(Database issue):D119-22. doi: 10.1093/nar/gkp803. Epub 2009 Sep 28.

6.

miRGator: an integrated system for functional annotation of microRNAs.

Nam S, Kim B, Shin S, Lee S.

Nucleic Acids Res. 2008 Jan;36(Database issue):D159-64. Epub 2007 Oct 16.

7.

Genome-wide analysis of small RNA and novel MicroRNA discovery in human acute lymphoblastic leukemia based on extensive sequencing approach.

Zhang H, Yang JH, Zheng YS, Zhang P, Chen X, Wu J, Xu L, Luo XQ, Ke ZY, Zhou H, Qu LH, Chen YQ.

PLoS One. 2009 Sep 2;4(9):e6849. doi: 10.1371/journal.pone.0006849.

8.

miR2Gene: pattern discovery of single gene, multiple genes, and pathways by enrichment analysis of their microRNA regulators.

Qiu C, Wang J, Cui Q.

BMC Syst Biol. 2011;5 Suppl 2:S9. doi: 10.1186/1752-0509-5-S2-S9. Epub 2011 Dec 14.

9.

Regulation of human cardiac ion channel genes by microRNAs: theoretical perspective and pathophysiological implications.

Luo X, Zhang H, Xiao J, Wang Z.

Cell Physiol Biochem. 2010;25(6):571-86. doi: 10.1159/000315076. Epub 2010 May 18.

10.

Integrative high-resolution microarray analysis of human myeloma cell lines reveals deregulated miRNA expression associated with allelic imbalances and gene expression profiles.

Lionetti M, Agnelli L, Mosca L, Fabris S, Andronache A, Todoerti K, Ronchetti D, Deliliers GL, Neri A.

Genes Chromosomes Cancer. 2009 Jun;48(6):521-31. doi: 10.1002/gcc.20660.

PMID:
19306352
11.

Characterization of B- and T-lineage acute lymphoblastic leukemia by integrated analysis of MicroRNA and mRNA expression profiles.

Fulci V, Colombo T, Chiaretti S, Messina M, Citarella F, Tavolaro S, Guarini A, FoĆ  R, Macino G.

Genes Chromosomes Cancer. 2009 Dec;48(12):1069-82. doi: 10.1002/gcc.20709.

PMID:
19760605
12.

Computational analysis of microRNA function in heart development.

Liu G, Ding M, Chen J, Huang J, Wang H, Jing Q, Shen B.

Acta Biochim Biophys Sin (Shanghai). 2010 Sep;42(9):662-70. doi: 10.1093/abbs/gmq072. Epub 2010 Aug 17.

PMID:
20716610
13.

Global gene expression analysis reveals reduced abundance of putative microRNA targets in human prostate tumours.

Sun R, Fu X, Li Y, Xie Y, Mao Y.

BMC Genomics. 2009 Feb 26;10:93. doi: 10.1186/1471-2164-10-93.

14.

miRNAMap 2.0: genomic maps of microRNAs in metazoan genomes.

Hsu SD, Chu CH, Tsou AP, Chen SJ, Chen HC, Hsu PW, Wong YH, Chen YH, Chen GH, Huang HD.

Nucleic Acids Res. 2008 Jan;36(Database issue):D165-9. Epub 2007 Nov 19.

15.

miRNAMap: genomic maps of microRNA genes and their target genes in mammalian genomes.

Hsu PW, Huang HD, Hsu SD, Lin LZ, Tsou AP, Tseng CP, Stadler PF, Washietl S, Hofacker IL.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D135-9.

16.

Identification of novel homologous microRNA genes in the rhesus macaque genome.

Yue J, Sheng Y, Orwig KE.

BMC Genomics. 2008 Jan 10;9:8. doi: 10.1186/1471-2164-9-8.

17.

CID-miRNA: a web server for prediction of novel miRNA precursors in human genome.

Tyagi S, Vaz C, Gupta V, Bhatia R, Maheshwari S, Srinivasan A, Bhattacharya A.

Biochem Biophys Res Commun. 2008 Aug 8;372(4):831-4. doi: 10.1016/j.bbrc.2008.05.134. Epub 2008 Jun 2.

PMID:
18522801
18.

Computational identification of novel microRNA homologs in the chimpanzee genome.

Baev V, Daskalova E, Minkov I.

Comput Biol Chem. 2009 Feb;33(1):62-70. doi: 10.1016/j.compbiolchem.2008.07.024. Epub 2008 Jul 26.

PMID:
18760970
19.

MicroRNA networks in mouse lung organogenesis.

Dong J, Jiang G, Asmann YW, Tomaszek S, Jen J, Kislinger T, Wigle DA.

PLoS One. 2010 May 26;5(5):e10854. doi: 10.1371/journal.pone.0010854.

20.

Signatures of microRNAs and selected microRNA target genes in human melanoma.

Philippidou D, Schmitt M, Moser D, Margue C, Nazarov PV, Muller A, Vallar L, Nashan D, Behrmann I, Kreis S.

Cancer Res. 2010 May 15;70(10):4163-73. doi: 10.1158/0008-5472.CAN-09-4512. Epub 2010 May 4.

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