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Items: 1 to 20 of 162

1.

Stacking interaction in the middle and at the end of a DNA helix studied with non-natural nucleotides.

Nakano S, Oka H, Uotani Y, Uenishi K, Fujii M, Sugimoto N.

Mol Biosyst. 2010 Oct;6(10):2023-9. doi: 10.1039/c0mb00002g. Epub 2010 Aug 9.

PMID:
20694257
2.

DNA base dimers are stabilized by hydrogen-bonding interactions including non-Watson-Crick pairing near graphite surfaces.

Shankar A, Jagota A, Mittal J.

J Phys Chem B. 2012 Oct 11;116(40):12088-94. doi: 10.1021/jp304260t. Epub 2012 Sep 26.

PMID:
22967176
3.

Large stacking stability of a base pair-mimic nucleotide on the DNA duplex.

Uotani Y, Nakano S, Nakashima S, Anno Y, Fujii M, Sugimoto N.

Nucleic Acids Res Suppl. 2003;(3):79-80.

PMID:
14510389
4.

Effect of Watson-Crick and Hoogsteen base pairing on the conformational stability of C8-phenoxyl-2'-deoxyguanosine adducts.

Millen AL, Churchill CD, Manderville RA, Wetmore SD.

J Phys Chem B. 2010 Oct 14;114(40):12995-3004. doi: 10.1021/jp105817p.

PMID:
20853889
5.
6.

The 5-Me of thyminyl (T) interaction with the neighboring nucleobases dictate the relative stability of isosequential DNA-RNA hybrid duplexes.

Chatterjee S, Pathmasiri W, Chattopadhyaya J.

Org Biomol Chem. 2005 Nov 7;3(21):3911-5. Epub 2005 Sep 29.

PMID:
16240008
7.

New base pairing motifs. The synthesis and thermal stability of oligodeoxynucleotides containing imidazopyridopyrimidine nucleosides with the ability to form four hydrogen bonds.

Minakawa N, Kojima N, Hikishima S, Sasaki T, Kiyosue A, Atsumi N, Ueno Y, Matsuda A.

J Am Chem Soc. 2003 Aug 20;125(33):9970-82.

PMID:
12914460
8.
9.

A uniform mechanism correlating dangling-end stabilization and stacking geometry.

Isaksson J, Chattopadhyaya J.

Biochemistry. 2005 Apr 12;44(14):5390-401.

PMID:
15807532
13.

Minor groove binding of SN6999 to an alkylated DNA: molecular structure of d(CGC[e6G]AATTCGCG)-SN6999 complex.

Gao YG, Sriram M, Denny WA, Wang AH.

Biochemistry. 1993 Sep 21;32(37):9639-48.

PMID:
8373768
14.

A specific partner for abasic damage in DNA.

Matray TJ, Kool ET.

Nature. 1999 Jun 17;399(6737):704-8.

PMID:
10385125
16.

A DNA hairpin with a single residue loop closed by a strongly distorted Watson-Crick G x C base-pair.

El Amri C, Mauffret O, Monnot M, Tevanian G, Lescot E, Porumb H, Fermandjian S.

J Mol Biol. 1999 Nov 26;294(2):427-42.

PMID:
10610769
17.

Synthesis and properties of the simplified nucleic acid glycol nucleic acid.

Meggers E, Zhang L.

Acc Chem Res. 2010 Aug 17;43(8):1092-102. doi: 10.1021/ar900292q.

PMID:
20405911
18.

Long RNA dangling end has large energetic contribution to duplex stability.

Ohmichi T, Nakano S, Miyoshi D, Sugimoto N.

J Am Chem Soc. 2002 Sep 4;124(35):10367-72.

PMID:
12197739
19.
20.

Towards a DNA-like duplex without hydrogen bonds.

Mathis G, Schütz R, Hunziker J.

Nucleosides Nucleotides Nucleic Acids. 2003 May-Aug;22(5-8):1183-5.

PMID:
14565375

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