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Items: 1 to 20 of 90

1.

Characterizing the connectivity of poly-ubiquitin chains by selected reaction monitoring mass spectrometry.

Mirzaei H, Rogers RS, Grimes B, Eng J, Aderem A, Aebersold R.

Mol Biosyst. 2010 Oct;6(10):2004-14. doi: 10.1039/c005242f. Epub 2010 Aug 6.

2.

Lysine 63-linked polyubiquitin chain may serve as a targeting signal for the 26S proteasome.

Saeki Y, Kudo T, Sone T, Kikuchi Y, Yokosawa H, Toh-e A, Tanaka K.

EMBO J. 2009 Feb 18;28(4):359-71. doi: 10.1038/emboj.2008.305. Epub 2009 Jan 15.

3.

The parallel reaction monitoring method contributes to a highly sensitive polyubiquitin chain quantification.

Tsuchiya H, Tanaka K, Saeki Y.

Biochem Biophys Res Commun. 2013 Jun 28;436(2):223-9. doi: 10.1016/j.bbrc.2013.05.080. Epub 2013 May 31.

4.

Quantitative proteomics reveals the function of unconventional ubiquitin chains in proteasomal degradation.

Xu P, Duong DM, Seyfried NT, Cheng D, Xie Y, Robert J, Rush J, Hochstrasser M, Finley D, Peng J.

Cell. 2009 Apr 3;137(1):133-45. doi: 10.1016/j.cell.2009.01.041.

5.

The emerging complexity of ubiquitin architecture.

Ohtake F, Tsuchiya H.

J Biochem. 2017 Feb 1;161(2):125-133. doi: 10.1093/jb/mvw088. Review.

PMID:
28011818
6.

Characterization of polyubiquitin chain structure by middle-down mass spectrometry.

Xu P, Peng J.

Anal Chem. 2008 May 1;80(9):3438-44. doi: 10.1021/ac800016w. Epub 2008 Mar 20.

7.

Improved quantitative mass spectrometry methods for characterizing complex ubiquitin signals.

Phu L, Izrael-Tomasevic A, Matsumoto ML, Bustos D, Dynek JN, Fedorova AV, Bakalarski CE, Arnott D, Deshayes K, Dixit VM, Kelley RF, Vucic D, Kirkpatrick DS.

Mol Cell Proteomics. 2011 May;10(5):M110.003756. doi: 10.1074/mcp.M110.003756. Epub 2010 Nov 3.

8.

Solution conformation of Lys63-linked di-ubiquitin chain provides clues to functional diversity of polyubiquitin signaling.

Varadan R, Assfalg M, Haririnia A, Raasi S, Pickart C, Fushman D.

J Biol Chem. 2004 Feb 20;279(8):7055-63. Epub 2003 Nov 25.

9.

Diversity of polyubiquitin chains.

Adhikari A, Chen ZJ.

Dev Cell. 2009 Apr;16(4):485-6. doi: 10.1016/j.devcel.2009.04.001.

10.

A Rapid and Versatile Method for Generating Proteins with Defined Ubiquitin Chains.

Martinez-Fonts K, Matouschek A.

Biochemistry. 2016 Mar 29;55(12):1898-908. doi: 10.1021/acs.biochem.5b01310. Epub 2016 Mar 17.

11.

Weighing in on ubiquitin: the expanding role of mass-spectrometry-based proteomics.

Kirkpatrick DS, Denison C, Gygi SP.

Nat Cell Biol. 2005 Aug;7(8):750-7. Review.

12.

Purification of poly-ubiquitinated proteins by S5a-affinity chromatography.

Layfield R, Tooth D, Landon M, Dawson S, Mayer J, Alban A.

Proteomics. 2001 Jun;1(6):773-7.

PMID:
11677784
13.

Sites of ubiquitin attachment in Saccharomyces cerevisiae.

Starita LM, Lo RS, Eng JK, von Haller PD, Fields S.

Proteomics. 2012 Jan;12(2):236-40. doi: 10.1002/pmic.201100166. Epub 2011 Dec 20.

14.

Extraproteasomal Rpn10 restricts access of the polyubiquitin-binding protein Dsk2 to proteasome.

Matiuhin Y, Kirkpatrick DS, Ziv I, Kim W, Dakshinamurthy A, Kleifeld O, Gygi SP, Reis N, Glickman MH.

Mol Cell. 2008 Nov 7;32(3):415-25. doi: 10.1016/j.molcel.2008.10.011.

15.

Top-down 193-nm ultraviolet photodissociation mass spectrometry for simultaneous determination of polyubiquitin chain length and topology.

Cannon JR, Martinez-Fonts K, Robotham SA, Matouschek A, Brodbelt JS.

Anal Chem. 2015 Feb 3;87(3):1812-20. doi: 10.1021/ac5038363. Epub 2015 Jan 15.

16.

Role of UbL family modifiers and their binding proteins in cell signaling.

van Wijk SJ, Bienko M, Dikic I.

Methods Mol Biol. 2012;832:163-71. doi: 10.1007/978-1-61779-474-2_11.

PMID:
22350884
17.

Characterization of ubiquitination dependent dynamics in growth factor receptor signaling by quantitative proteomics.

Akimov V, Rigbolt KT, Nielsen MM, Blagoev B.

Mol Biosyst. 2011 Dec;7(12):3223-33. doi: 10.1039/c1mb05185g. Epub 2011 Sep 28.

PMID:
21956701
18.

The absolute quantification strategy: a general procedure for the quantification of proteins and post-translational modifications.

Kirkpatrick DS, Gerber SA, Gygi SP.

Methods. 2005 Mar;35(3):265-73. Epub 2005 Jan 12.

PMID:
15722223
19.

Deciphering the ubiquitin proteome: Limits and advantages of high throughput global affinity purification-mass spectrometry approaches.

Polge C, Uttenweiler-Joseph S, Leulmi R, Heng AE, Burlet-Schiltz O, Attaix D, Taillandier D.

Int J Biochem Cell Biol. 2013 Oct;45(10):2136-46. doi: 10.1016/j.biocel.2013.05.031. Epub 2013 Jun 10. Review.

PMID:
23764619

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