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Items: 1 to 20 of 103

1.

The Amphimedon queenslandica genome and the evolution of animal complexity.

Srivastava M, Simakov O, Chapman J, Fahey B, Gauthier ME, Mitros T, Richards GS, Conaco C, Dacre M, Hellsten U, Larroux C, Putnam NH, Stanke M, Adamska M, Darling A, Degnan SM, Oakley TH, Plachetzki DC, Zhai Y, Adamski M, Calcino A, Cummins SF, Goodstein DM, Harris C, Jackson DJ, Leys SP, Shu S, Woodcroft BJ, Vervoort M, Kosik KS, Manning G, Degnan BM, Rokhsar DS.

Nature. 2010 Aug 5;466(7307):720-6. doi: 10.1038/nature09201.

2.

The analysis of eight transcriptomes from all poriferan classes reveals surprising genetic complexity in sponges.

Riesgo A, Farrar N, Windsor PJ, Giribet G, Leys SP.

Mol Biol Evol. 2014 May;31(5):1102-20. doi: 10.1093/molbev/msu057.

PMID:
24497032
3.

Transcriptome profiling of the demosponge Amphimedon queenslandica reveals genome-wide events that accompany major life cycle transitions.

Conaco C, Neveu P, Zhou H, Arcila ML, Degnan SM, Degnan BM, Kosik KS.

BMC Genomics. 2012 May 30;13:209.

4.

The characterization of sponge NLRs provides insight into the origin and evolution of this innate immune gene family in animals.

Yuen B, Bayes JM, Degnan SM.

Mol Biol Evol. 2014 Jan;31(1):106-20. doi: 10.1093/molbev/mst174.

5.

Evolution of RNA-binding proteins in animals: insights from genome-wide analysis in the sponge Amphimedon queenslandica.

Kerner P, Degnan SM, Marchand L, Degnan BM, Vervoort M.

Mol Biol Evol. 2011 Aug;28(8):2289-303. doi: 10.1093/molbev/msr046.

PMID:
21325094
6.

The GPCR repertoire in the demosponge Amphimedon queenslandica: insights into the GPCR system at the early divergence of animals.

Krishnan A, Dnyansagar R, Almén MS, Williams MJ, Fredriksson R, Manoj N, Schiöth HB.

BMC Evol Biol. 2014 Dec 21;14:270. doi: 10.1186/s12862-014-0270-4.

7.

Deep developmental transcriptome sequencing uncovers numerous new genes and enhances gene annotation in the sponge Amphimedon queenslandica.

Fernandez-Valverde SL, Calcino AD, Degnan BM.

BMC Genomics. 2015 May 15;16:387. doi: 10.1186/s12864-015-1588-z.

8.

Wnt and TGF-beta expression in the sponge Amphimedon queenslandica and the origin of metazoan embryonic patterning.

Adamska M, Degnan SM, Green KM, Adamski M, Craigie A, Larroux C, Degnan BM.

PLoS One. 2007 Oct 10;2(10):e1031.

9.

Genesis and expansion of metazoan transcription factor gene classes.

Larroux C, Luke GN, Koopman P, Rokhsar DS, Shimeld SM, Degnan BM.

Mol Biol Evol. 2008 May;25(5):980-96. doi: 10.1093/molbev/msn047.

PMID:
18296413
10.

Origin of animal epithelia: insights from the sponge genome.

Fahey B, Degnan BM.

Evol Dev. 2010 Nov-Dec;12(6):601-17. doi: 10.1111/j.1525-142X.2010.00445.x.

PMID:
21040426
11.

Detection of Prokaryotic Genes in the Amphimedon queenslandica Genome.

Conaco C, Tsoulfas P, Sakarya O, Dolan A, Werren J, Kosik KS.

PLoS One. 2016 Mar 9;11(3):e0151092. doi: 10.1371/journal.pone.0151092.

12.

Structure and expression of conserved Wnt pathway components in the demosponge Amphimedon queenslandica.

Adamska M, Larroux C, Adamski M, Green K, Lovas E, Koop D, Richards GS, Zwafink C, Degnan BM.

Evol Dev. 2010 Sep-Oct;12(5):494-518. doi: 10.1111/j.1525-142X.2010.00435.x.

PMID:
20883218
13.

Retracing the path of planar cell polarity.

Schenkelaars Q, Fierro-Constain L, Renard E, Borchiellini C.

BMC Evol Biol. 2016 Apr 2;16:69. doi: 10.1186/s12862-016-0641-0.

14.

Comparative analyses of developmental transcription factor repertoires in sponges reveal unexpected complexity of the earliest animals.

Fortunato SA, Adamski M, Adamska M.

Mar Genomics. 2015 Dec;24 Pt 2:121-9. doi: 10.1016/j.margen.2015.07.008. Review.

PMID:
26253310
15.

The physiology and molecular biology of sponge tissues.

Leys SP, Hill A.

Adv Mar Biol. 2012;62:1-56. doi: 10.1016/B978-0-12-394283-8.00001-1. Review.

PMID:
22664120
16.

Demosponge EST sequencing reveals a complex genetic toolkit of the simplest metazoans.

Harcet M, Roller M, Cetković H, Perina D, Wiens M, Müller WE, Vlahovicek K.

Mol Biol Evol. 2010 Dec;27(12):2747-56. doi: 10.1093/molbev/msq174.

17.

The Demosponge Amphimedon queenslandica: Reconstructing the Ancestral Metazoan Genome and Deciphering the Origin of Animal Multicellularity.

Degnan BM, Adamska M, Craigie A, Degnan SM, Fahey B, Gauthier M, Hooper JN, Larroux C, Leys SP, Lovas E, Richards GS.

CSH Protoc. 2008 Dec 1;2008:pdb.emo108. doi: 10.1101/pdb.emo108.

PMID:
21356734
18.

The transcription factor NF-kappaB in the demosponge Amphimedon queenslandica: insights on the evolutionary origin of the Rel homology domain.

Gauthier M, Degnan BM.

Dev Genes Evol. 2008 Jan;218(1):23-32. doi: 10.1007/s00427-007-0197-5.

PMID:
18175145
19.

The genome of the sponge Amphimedon queenslandica provides new perspectives into the origin of Toll-like and interleukin 1 receptor pathways.

Gauthier ME, Du Pasquier L, Degnan BM.

Evol Dev. 2010 Sep-Oct;12(5):519-33. doi: 10.1111/j.1525-142X.2010.00436.x.

PMID:
20883219
20.

NUMTs in the sponge genome reveal conserved transposition mechanisms in metazoans.

Erpenbeck D, Voigt O, Adamski M, Woodcroft BJ, Hooper JN, Wörheide G, Degnan BM.

Mol Biol Evol. 2011 Jan;28(1):1-5. doi: 10.1093/molbev/msq217.

PMID:
20720154
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