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Items: 1 to 20 of 74

1.

Conserved Daily Transcriptional Programs in Carica papaya.

Zdepski A, Wang W, Priest HD, Ali F, Alam M, Mockler TC, Michael TP.

Trop Plant Biol. 2008 Dec;1(3-4):236-245. Epub 2008 Dec 16.

2.

Global profiling of rice and poplar transcriptomes highlights key conserved circadian-controlled pathways and cis-regulatory modules.

Filichkin SA, Breton G, Priest HD, Dharmawardhana P, Jaiswal P, Fox SE, Michael TP, Chory J, Kay SA, Mockler TC.

PLoS One. 2011;6(6):e16907. doi: 10.1371/journal.pone.0016907. Epub 2011 Jun 9.

3.

Analysis of papaya BAC end sequences reveals first insights into the organization of a fruit tree genome.

Lai CW, Yu Q, Hou S, Skelton RL, Jones MR, Lewis KL, Murray J, Eustice M, Guan P, Agbayani R, Moore PH, Ming R, Presting GG.

Mol Genet Genomics. 2006 Jul;276(1):1-12. Epub 2006 May 16.

PMID:
16703363
4.

The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus).

Ming R, Hou S, Feng Y, Yu Q, Dionne-Laporte A, Saw JH, Senin P, Wang W, Ly BV, Lewis KL, Salzberg SL, Feng L, Jones MR, Skelton RL, Murray JE, Chen C, Qian W, Shen J, Du P, Eustice M, Tong E, Tang H, Lyons E, Paull RE, Michael TP, Wall K, Rice DW, Albert H, Wang ML, Zhu YJ, Schatz M, Nagarajan N, Acob RA, Guan P, Blas A, Wai CM, Ackerman CM, Ren Y, Liu C, Wang J, Wang J, Na JK, Shakirov EV, Haas B, Thimmapuram J, Nelson D, Wang X, Bowers JE, Gschwend AR, Delcher AL, Singh R, Suzuki JY, Tripathi S, Neupane K, Wei H, Irikura B, Paidi M, Jiang N, Zhang W, Presting G, Windsor A, Navajas-Pérez R, Torres MJ, Feltus FA, Porter B, Li Y, Burroughs AM, Luo MC, Liu L, Christopher DA, Mount SM, Moore PH, Sugimura T, Jiang J, Schuler MA, Friedman V, Mitchell-Olds T, Shippen DE, dePamphilis CW, Palmer JD, Freeling M, Paterson AH, Gonsalves D, Wang L, Alam M.

Nature. 2008 Apr 24;452(7190):991-6. doi: 10.1038/nature06856.

5.

Insight into missing genetic links between two evening-expressed pseudo-response regulator genes TOC1 and PRR5 in the circadian clock-controlled circuitry in Arabidopsis thaliana.

Ito S, Niwa Y, Nakamichi N, Kawamura H, Yamashino T, Mizuno T.

Plant Cell Physiol. 2008 Feb;49(2):201-13. doi: 10.1093/pcp/pcm178. Epub 2008 Jan 4.

PMID:
18178585
6.

A morning-specific phytohormone gene expression program underlying rhythmic plant growth.

Michael TP, Breton G, Hazen SP, Priest H, Mockler TC, Kay SA, Chory J.

PLoS Biol. 2008 Sep 16;6(9):e225. doi: 10.1371/journal.pbio.0060225.

7.

Global transcriptome analysis reveals circadian regulation of key pathways in plant growth and development.

Covington MF, Maloof JN, Straume M, Kay SA, Harmer SL.

Genome Biol. 2008;9(8):R130. doi: 10.1186/gb-2008-9-8-r130. Epub 2008 Aug 18.

8.

Novel thigmomorphogenetic responses in Carica papaya: touch decreases anthocyanin levels and stimulates petiole cork outgrowths.

Porter BW, Zhu YJ, Webb DT, Christopher DA.

Ann Bot. 2009 Apr;103(6):847-58. doi: 10.1093/aob/mcp009. Epub 2009 Jan 31.

9.

Circadian Clock Genes Universally Control Key Agricultural Traits.

Bendix C, Marshall CM, Harmon FG.

Mol Plant. 2015 Aug;8(8):1135-52. doi: 10.1016/j.molp.2015.03.003. Epub 2015 Mar 13. Review.

10.

In silico cloning and characterization of the TGA (TGACG MOTIF-BINDING FACTOR) transcription factors subfamily in Carica papaya.

Idrovo Espín FM, Peraza-Echeverria S, Fuentes G, Santamaría JM.

Plant Physiol Biochem. 2012 May;54:113-22. doi: 10.1016/j.plaphy.2012.02.011. Epub 2012 Feb 22.

PMID:
22410205
11.

Sex determination in flowering plants: papaya as a model system.

Aryal R, Ming R.

Plant Sci. 2014 Mar;217-218:56-62. doi: 10.1016/j.plantsci.2013.10.018. Epub 2013 Nov 5. Review.

PMID:
24467896
12.
13.

Modelling the widespread effects of TOC1 signalling on the plant circadian clock and its outputs.

Pokhilko A, Mas P, Millar AJ.

BMC Syst Biol. 2013 Mar 19;7:23. doi: 10.1186/1752-0509-7-23.

14.

Alternative splicing and nonsense-mediated decay of circadian clock genes under environmental stress conditions in Arabidopsis.

Kwon YJ, Park MJ, Kim SG, Baldwin IT, Park CM.

BMC Plant Biol. 2014 May 19;14:136. doi: 10.1186/1471-2229-14-136.

15.

Conserved expression profiles of circadian clock-related genes in two Lemna species showing long-day and short-day photoperiodic flowering responses.

Miwa K, Serikawa M, Suzuki S, Kondo T, Oyama T.

Plant Cell Physiol. 2006 May;47(5):601-12. Epub 2006 Mar 8.

PMID:
16524874
16.

Clocks in the green lineage: comparative functional analysis of the circadian architecture of the picoeukaryote ostreococcus.

Corellou F, Schwartz C, Motta JP, Djouani-Tahri el B, Sanchez F, Bouget FY.

Plant Cell. 2009 Nov;21(11):3436-49. doi: 10.1105/tpc.109.068825. Epub 2009 Nov 30.

17.

Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with rosids.

Lyons E, Pedersen B, Kane J, Alam M, Ming R, Tang H, Wang X, Bowers J, Paterson A, Lisch D, Freeling M.

Plant Physiol. 2008 Dec;148(4):1772-81. doi: 10.1104/pp.108.124867. Epub 2008 Oct 24.

18.

Functional conservation of clock-related genes in flowering plants: overexpression and RNA interference analyses of the circadian rhythm in the monocotyledon Lemna gibba.

Serikawa M, Miwa K, Kondo T, Oyama T.

Plant Physiol. 2008 Apr;146(4):1952-63. doi: 10.1104/pp.107.114611. Epub 2008 Feb 15.

19.

Transcriptional and post-transcriptional control of the plant circadian gene regulatory network.

Hernando CE, Romanowski A, Yanovsky MJ.

Biochim Biophys Acta. 2017 Jan;1860(1):84-94. doi: 10.1016/j.bbagrm.2016.07.001. Epub 2016 Jul 10. Review.

PMID:
27412912
20.

Conserved noncoding sequences highlight shared components of regulatory networks in dicotyledonous plants.

Baxter L, Jironkin A, Hickman R, Moore J, Barrington C, Krusche P, Dyer NP, Buchanan-Wollaston V, Tiskin A, Beynon J, Denby K, Ott S.

Plant Cell. 2012 Oct;24(10):3949-65. doi: 10.1105/tpc.112.103010. Epub 2012 Oct 30.

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