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Items: 1 to 20 of 129

1.

Pathway analysis software: annotation errors and solutions.

Henderson-Maclennan NK, Papp JC, Talbot CC Jr, McCabe ER, Presson AP.

Mol Genet Metab. 2010 Oct-Nov;101(2-3):134-40. doi: 10.1016/j.ymgme.2010.06.005. Epub 2010 Jun 22.

2.

MADGene: retrieval and processing of gene identifier lists for the analysis of heterogeneous microarray datasets.

Baron D, Bihouée A, Teusan R, Dubois E, Savagner F, Steenman M, Houlgatte R, Ramstein G.

Bioinformatics. 2011 Mar 1;27(5):725-6. doi: 10.1093/bioinformatics/btq710. Epub 2011 Jan 6.

3.
4.

GeneTools--application for functional annotation and statistical hypothesis testing.

Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

BMC Bioinformatics. 2006 Oct 24;7:470.

5.

Atlas - a data warehouse for integrative bioinformatics.

Shah SP, Huang Y, Xu T, Yuen MM, Ling J, Ouellette BF.

BMC Bioinformatics. 2005 Feb 21;6:34.

6.

Onto-Tools: new additions and improvements in 2006.

Khatri P, Voichita C, Kattan K, Ansari N, Khatri A, Georgescu C, Tarca AL, Draghici S.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W206-11. Epub 2007 Jun 21.

7.

A web-based platform for rice microarray annotation and data analysis.

Chen D, Zhang F, Yuan C, Lu J, Li X, Chen M.

Sci China Life Sci. 2010 Dec;53(12):1467-73. doi: 10.1007/s11427-010-4101-6. Epub 2010 Dec 23.

PMID:
21181349
8.

Recent additions and improvements to the Onto-Tools.

Khatri P, Sellamuthu S, Malhotra P, Amin K, Done A, Draghici S.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W762-5.

9.

RACE: Remote Analysis Computation for gene Expression data.

Psarros M, Heber S, Sick M, Thoppae G, Harshman K, Sick B.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W638-43.

10.

GeneNotes--a novel information management software for biologists.

Hong P, Wong WH.

BMC Bioinformatics. 2005 Feb 1;6:20.

11.

Consistent annotation of gene expression arrays.

Ballester B, Johnson N, Proctor G, Flicek P.

BMC Genomics. 2010 May 11;11:294. doi: 10.1186/1471-2164-11-294.

12.

GO-Elite: a flexible solution for pathway and ontology over-representation.

Zambon AC, Gaj S, Ho I, Hanspers K, Vranizan K, Evelo CT, Conklin BR, Pico AR, Salomonis N.

Bioinformatics. 2012 Aug 15;28(16):2209-10. doi: 10.1093/bioinformatics/bts366. Epub 2012 Jun 27.

13.

CRCView: a web server for analyzing and visualizing microarray gene expression data using model-based clustering.

Xiang Z, Qin ZS, He Y.

Bioinformatics. 2007 Jul 15;23(14):1843-5. Epub 2007 May 7.

PMID:
17485426
14.

DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists.

Huang DW, Sherman BT, Tan Q, Kir J, Liu D, Bryant D, Guo Y, Stephens R, Baseler MW, Lane HC, Lempicki RA.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W169-75. Epub 2007 Jun 18.

15.
16.

GeneCruiser: a web service for the annotation of microarray data.

Liefeld T, Reich M, Gould J, Zhang P, Tamayo P, Mesirov JP.

Bioinformatics. 2005 Sep 15;21(18):3681-2. Epub 2005 Jul 19.

PMID:
16030072
17.

ArrayIDer: automated structural re-annotation pipeline for DNA microarrays.

van den Berg BH, Konieczka JH, McCarthy FM, Burgess SC.

BMC Bioinformatics. 2009 Jan 23;10:30. doi: 10.1186/1471-2105-10-30.

18.

ArrayQuest: a web resource for the analysis of DNA microarray data.

Argraves GL, Jani S, Barth JL, Argraves WS.

BMC Bioinformatics. 2005 Dec 1;6:287.

19.

mu-CS: an extension of the TM4 platform to manage Affymetrix binary data.

Guzzi PH, Cannataro M.

BMC Bioinformatics. 2010 Jun 10;11:315. doi: 10.1186/1471-2105-11-315.

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