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Items: 1 to 20 of 95

1.

Active RNA polymerases: mobile or immobile molecular machines?

Papantonis A, Larkin JD, Wada Y, Ohta Y, Ihara S, Kodama T, Cook PR.

PLoS Biol. 2010 Jul 13;8(7):e1000419. doi: 10.1371/journal.pbio.1000419.

2.

Dynamic reconfiguration of long human genes during one transcription cycle.

Larkin JD, Cook PR, Papantonis A.

Mol Cell Biol. 2012 Jul;32(14):2738-47. doi: 10.1128/MCB.00179-12. Epub 2012 May 14.

3.

TNFα signals through specialized factories where responsive coding and miRNA genes are transcribed.

Papantonis A, Kohro T, Baboo S, Larkin JD, Deng B, Short P, Tsutsumi S, Taylor S, Kanki Y, Kobayashi M, Li G, Poh HM, Ruan X, Aburatani H, Ruan Y, Kodama T, Wada Y, Cook PR.

EMBO J. 2012 Nov 28;31(23):4404-14. doi: 10.1038/emboj.2012.288. Epub 2012 Oct 26.

4.

Space exploration by the promoter of a long human gene during one transcription cycle.

Larkin JD, Papantonis A, Cook PR, Marenduzzo D.

Nucleic Acids Res. 2013 Feb 1;41(4):2216-27. doi: 10.1093/nar/gks1441. Epub 2013 Jan 8.

5.

The organization of replication and transcription.

Cook PR.

Science. 1999 Jun 11;284(5421):1790-5. Review.

PMID:
10364545
6.

A wave of nascent transcription on activated human genes.

Wada Y, Ohta Y, Xu M, Tsutsumi S, Minami T, Inoue K, Komura D, Kitakami J, Oshida N, Papantonis A, Izumi A, Kobayashi M, Meguro H, Kanki Y, Mimura I, Yamamoto K, Mataki C, Hamakubo T, Shirahige K, Aburatani H, Kimura H, Kodama T, Cook PR, Ihara S.

Proc Natl Acad Sci U S A. 2009 Oct 27;106(43):18357-61. doi: 10.1073/pnas.0902573106. Epub 2009 Oct 13.

7.

Nuclear pre-mRNA compartmentalization: trafficking of released transcripts to splicing factor reservoirs.

Melcák I, Cermanová S, Jirsová K, Koberna K, Malínský J, Raska I.

Mol Biol Cell. 2000 Feb;11(2):497-510.

8.

The proteomes of transcription factories containing RNA polymerases I, II or III.

Melnik S, Deng B, Papantonis A, Baboo S, Carr IM, Cook PR.

Nat Methods. 2011 Sep 25;8(11):963-8. doi: 10.1038/nmeth.1705.

10.

Numbers and organization of RNA polymerases, nascent transcripts, and transcription units in HeLa nuclei.

Jackson DA, Iborra FJ, Manders EM, Cook PR.

Mol Biol Cell. 1998 Jun;9(6):1523-36. Erratum in: Mol Biol Cell 1998 Sep;9(9):2698.

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Similar active genes cluster in specialized transcription factories.

Xu M, Cook PR.

J Cell Biol. 2008 May 19;181(4):615-23. doi: 10.1083/jcb.200710053.

15.

Active RNA polymerases are localized within discrete transcription "factories' in human nuclei.

Iborra FJ, Pombo A, Jackson DA, Cook PR.

J Cell Sci. 1996 Jun;109 ( Pt 6):1427-36.

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17.

Multisubunit RNA polymerases melt only a single DNA base pair downstream of the active site.

Kashkina E, Anikin M, Brueckner F, Lehmann E, Kochetkov SN, McAllister WT, Cramer P, Temiakov D.

J Biol Chem. 2007 Jul 27;282(30):21578-82. Epub 2007 May 25. Erratum in: J Biol Chem. 2009 Aug 14;284(33):22500.

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