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Items: 1 to 20 of 296

1.
2.

Reticulate representation of evolutionary and functional relationships between phage genomes.

Lima-Mendez G, Van Helden J, Toussaint A, Leplae R.

Mol Biol Evol. 2008 Apr;25(4):762-77. doi: 10.1093/molbev/msn023. Epub 2008 Jan 29.

PMID:
18234706
3.

A modular view of the bacteriophage genomic space: identification of host and lifestyle marker modules.

Lima-Mendez G, Toussaint A, Leplae R.

Res Microbiol. 2011 Oct;162(8):737-46. doi: 10.1016/j.resmic.2011.06.006. Epub 2011 Jun 28.

PMID:
21767638
4.

Analysis of the phage sequence space: the benefit of structured information.

Lima-Mendez G, Toussaint A, Leplae R.

Virology. 2007 Sep 1;365(2):241-9. Epub 2007 May 7. Review.

5.

Evolutionary history of bacteriophages with double-stranded DNA genomes.

Glazko G, Makarenkov V, Liu J, Mushegian A.

Biol Direct. 2007 Dec 6;2:36.

6.

The genomes and comparative genomics of Lactobacillus delbrueckii phages.

Riipinen KA, Forsman P, Alatossava T.

Arch Virol. 2011 Jul;156(7):1217-33. doi: 10.1007/s00705-011-0980-5. Epub 2011 Apr 5.

PMID:
21465086
8.

Protein repertoire of double-stranded DNA bacteriophages.

Liu J, Glazko G, Mushegian A.

Virus Res. 2006 Apr;117(1):68-80. Epub 2006 Feb 21. Review.

PMID:
16490276
9.

Phage as agents of lateral gene transfer.

Canchaya C, Fournous G, Chibani-Chennoufi S, Dillmann ML, Brüssow H.

Curr Opin Microbiol. 2003 Aug;6(4):417-24. Review.

PMID:
12941415
10.

A bioinformatic analysis of ribonucleotide reductase genes in phage genomes and metagenomes.

Dwivedi B, Xue B, Lundin D, Edwards RA, Breitbart M.

BMC Evol Biol. 2013 Feb 7;13:33. doi: 10.1186/1471-2148-13-33.

11.

Comparative genome analysis of Listeria bacteriophages reveals extensive mosaicism, programmed translational frameshifting, and a novel prophage insertion site.

Dorscht J, Klumpp J, Bielmann R, Schmelcher M, Born Y, Zimmer M, Calendar R, Loessner MJ.

J Bacteriol. 2009 Dec;191(23):7206-15. doi: 10.1128/JB.01041-09. Epub 2009 Sep 25.

12.

Genome-wide expression dynamics of a marine virus and host reveal features of co-evolution.

Lindell D, Jaffe JD, Coleman ML, Futschik ME, Axmann IM, Rector T, Kettler G, Sullivan MB, Steen R, Hess WR, Church GM, Chisholm SW.

Nature. 2007 Sep 6;449(7158):83-6.

PMID:
17805294
13.

Molecular phylogenetics: testing evolutionary hypotheses.

Walsh DA, Sharma AK.

Methods Mol Biol. 2009;502:131-68. doi: 10.1007/978-1-60327-565-1_9.

PMID:
19082555
14.

Rule-based simulation of temperate bacteriophage infection: restriction-modification as a limiter to infection in bacterial populations.

Gregory R, Saunders VA, Saunders JR.

Biosystems. 2010 Jun;100(3):166-77. doi: 10.1016/j.biosystems.2010.02.010. Epub 2010 Mar 6.

PMID:
20211223
15.

Computational approaches to predict bacteriophage-host relationships.

Edwards RA, McNair K, Faust K, Raes J, Dutilh BE.

FEMS Microbiol Rev. 2016 Mar;40(2):258-72. doi: 10.1093/femsre/fuv048. Epub 2015 Dec 9. Review.

PMID:
26657537
16.

Comparative genomics of lactococcal phages: insight from the complete genome sequence of Lactococcus lactis phage BK5-T.

Desiere F, Mahanivong C, Hillier AJ, Chandry PS, Davidson BE, Brüssow H.

Virology. 2001 May 10;283(2):240-52.

17.

A Survey of the bacteriophage WO in the endosymbiotic bacteria Wolbachia.

Gavotte L, Henri H, Stouthamer R, Charif D, Charlat S, Boulétreau M, Vavre F.

Mol Biol Evol. 2007 Feb;24(2):427-35. Epub 2006 Nov 9.

PMID:
17095536
18.

PhiSiGns: an online tool to identify signature genes in phages and design PCR primers for examining phage diversity.

Dwivedi B, Schmieder R, Goldsmith DB, Edwards RA, Breitbart M.

BMC Bioinformatics. 2012 Mar 4;13:37. doi: 10.1186/1471-2105-13-37.

19.

Marine phage genomics: what have we learned?

Paul JH, Sullivan MB.

Curr Opin Biotechnol. 2005 Jun;16(3):299-307. Review.

PMID:
15961031
20.

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