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Items: 1 to 20 of 128

1.

Long noncoding RNA genes: conservation of sequence and brain expression among diverse amniotes.

Chodroff RA, Goodstadt L, Sirey TM, Oliver PL, Davies KE, Green ED, Molnár Z, Ponting CP.

Genome Biol. 2010;11(7):R72. doi: 10.1186/gb-2010-11-7-r72. Epub 2010 Jul 12.

2.

Rapid turnover of long noncoding RNAs and the evolution of gene expression.

Kutter C, Watt S, Stefflova K, Wilson MD, Goncalves A, Ponting CP, Odom DT, Marques AC.

PLoS Genet. 2012;8(7):e1002841. doi: 10.1371/journal.pgen.1002841. Epub 2012 Jul 26.

3.

Long noncoding RNA repertoire in chicken liver and adipose tissue.

Muret K, Klopp C, Wucher V, Esquerré D, Legeai F, Lecerf F, Désert C, Boutin M, Jehl F, Acloque H, Giuffra E, Djebali S, Foissac S, Derrien T, Lagarrigue S.

Genet Sel Evol. 2017 Jan 10;49(1):6. doi: 10.1186/s12711-016-0275-0.

4.

The four dimensions of noncoding RNA conservation.

Diederichs S.

Trends Genet. 2014 Apr;30(4):121-3. doi: 10.1016/j.tig.2014.01.004. Epub 2014 Mar 7. Review.

PMID:
24613441
5.

Examples of sequence conservation analyses capture a subset of mouse long non-coding RNAs sharing homology with fish conserved genomic elements.

Basu S, Müller F, Sanges R.

BMC Bioinformatics. 2013;14 Suppl 7:S14. doi: 10.1186/1471-2105-14-S7-S14. Epub 2013 Apr 22.

6.

Disruption of Visc-2, a Brain-Expressed Conserved Long Noncoding RNA, Does Not Elicit an Overt Anatomical or Behavioral Phenotype.

Oliver PL, Chodroff RA, Gosal A, Edwards B, Cheung AF, Gomez-Rodriguez J, Elliot G, Garrett LJ, Lickiss T, Szele F, Green ED, Molnár Z, Ponting CP.

Cereb Cortex. 2015 Oct;25(10):3572-85. doi: 10.1093/cercor/bhu196. Epub 2014 Sep 10.

7.

The sequence, structure and evolutionary features of HOTAIR in mammals.

He S, Liu S, Zhu H.

BMC Evol Biol. 2011 Apr 16;11:102. doi: 10.1186/1471-2148-11-102.

8.

Computational discovery of human coding and non-coding transcripts with conserved splice sites.

Rose D, Hiller M, Schutt K, Hackermüller J, Backofen R, Stadler PF.

Bioinformatics. 2011 Jul 15;27(14):1894-900. doi: 10.1093/bioinformatics/btr314. Epub 2011 May 26.

PMID:
21622663
9.

Evolution of coding and non-coding genes in HOX clusters of a marsupial.

Yu H, Lindsay J, Feng ZP, Frankenberg S, Hu Y, Carone D, Shaw G, Pask AJ, O'Neill R, Papenfuss AT, Renfree MB.

BMC Genomics. 2012 Jun 18;13:251. doi: 10.1186/1471-2164-13-251.

10.

Evolutionary conservation of long non-coding RNAs; sequence, structure, function.

Johnsson P, Lipovich L, Grandér D, Morris KV.

Biochim Biophys Acta. 2014 Mar;1840(3):1063-71. doi: 10.1016/j.bbagen.2013.10.035. Epub 2013 Oct 27. Review.

11.

Identification of long non-protein coding RNAs in chicken skeletal muscle using next generation sequencing.

Li T, Wang S, Wu R, Zhou X, Zhu D, Zhang Y.

Genomics. 2012 May;99(5):292-8. doi: 10.1016/j.ygeno.2012.02.003. Epub 2012 Feb 20.

12.

Mining mammalian transcript data for functional long non-coding RNAs.

Khachane AN, Harrison PM.

PLoS One. 2010 Apr 23;5(4):e10316. doi: 10.1371/journal.pone.0010316.

13.

Catalogues of mammalian long noncoding RNAs: modest conservation and incompleteness.

Marques AC, Ponting CP.

Genome Biol. 2009;10(11):R124. doi: 10.1186/gb-2009-10-11-r124. Epub 2009 Nov 6.

14.

Local regulation of gene expression by lncRNA promoters, transcription and splicing.

Engreitz JM, Haines JE, Perez EM, Munson G, Chen J, Kane M, McDonel PE, Guttman M, Lander ES.

Nature. 2016 Nov 17;539(7629):452-455. doi: 10.1038/nature20149. Epub 2016 Oct 26.

PMID:
27783602
15.

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution.

International Chicken Genome Sequencing Consortium..

Nature. 2004 Dec 9;432(7018):695-716. Erratum in: Nature. 2005 Feb 17;433(7027):777.

PMID:
15592404
16.

Comparison of RefSeq protein-coding regions in human and vertebrate genomes.

Fong JH, Murphy TD, Pruitt KD.

BMC Genomics. 2013 Sep 25;14:654. doi: 10.1186/1471-2164-14-654.

17.

Conservation and functional element discovery in 20 angiosperm plant genomes.

Hupalo D, Kern AD.

Mol Biol Evol. 2013 Jul;30(7):1729-44. doi: 10.1093/molbev/mst082. Epub 2013 May 2.

PMID:
23640124
18.

Comparative analysis of human protein-coding and noncoding RNAs between brain and 10 mixed cell lines by RNA-Seq.

Chen G, Yin K, Shi L, Fang Y, Qi Y, Li P, Luo J, He B, Liu M, Shi T.

PLoS One. 2011;6(11):e28318. doi: 10.1371/journal.pone.0028318. Epub 2011 Nov 30.

19.

Organization of conserved elements near key developmental regulators in vertebrate genomes.

Woolfe A, Elgar G.

Adv Genet. 2008;61:307-38. doi: 10.1016/S0065-2660(07)00012-0. Review.

PMID:
18282512
20.

The GENCODE v7 catalog of human long noncoding RNAs: analysis of their gene structure, evolution, and expression.

Derrien T, Johnson R, Bussotti G, Tanzer A, Djebali S, Tilgner H, Guernec G, Martin D, Merkel A, Knowles DG, Lagarde J, Veeravalli L, Ruan X, Ruan Y, Lassmann T, Carninci P, Brown JB, Lipovich L, Gonzalez JM, Thomas M, Davis CA, Shiekhattar R, Gingeras TR, Hubbard TJ, Notredame C, Harrow J, Guigó R.

Genome Res. 2012 Sep;22(9):1775-89. doi: 10.1101/gr.132159.111.

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