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Items: 1 to 20 of 86

1.

The critical roles of residues P235 and F236 of subunit A of the motor protein A-ATP synthase in P-loop formation and nucleotide binding.

Kumar A, Manimekalai MS, Balakrishna AM, Priya R, Biuković G, Jeyakanthan J, Grüber G.

J Mol Biol. 2010 Sep 3;401(5):892-905. doi: 10.1016/j.jmb.2010.06.070. Epub 2010 Jul 6.

PMID:
20615420
2.

Nucleotide binding states of subunit A of the A-ATP synthase and the implication of P-loop switch in evolution.

Kumar A, Manimekalai MS, Balakrishna AM, Jeyakanthan J, Grüber G.

J Mol Biol. 2010 Feb 19;396(2):301-20. doi: 10.1016/j.jmb.2009.11.046. Epub 2009 Nov 26.

PMID:
19944110
3.

Conserved glycine residues in the P-loop of ATP synthases form a doorframe for nucleotide entrance.

Priya R, Kumar A, Manimekalai MS, Grüber G.

J Mol Biol. 2011 Oct 28;413(3):657-66. doi: 10.1016/j.jmb.2011.08.045. Epub 2011 Sep 8.

PMID:
21925186
4.

The transition-like state and Pi entrance into the catalytic a subunit of the biological engine A-ATP synthase.

Manimekalai MS, Kumar A, Jeyakanthan J, Grüber G.

J Mol Biol. 2011 May 13;408(4):736-54. doi: 10.1016/j.jmb.2011.03.010. Epub 2011 Mar 17.

PMID:
21396943
5.

A second transient position of ATP on its trail to the nucleotide-binding site of subunit B of the motor protein A(1)A(0) ATP synthase.

Manimekalai MS, Kumar A, Balakrishna AM, Grüber G.

J Struct Biol. 2009 Apr;166(1):38-45. doi: 10.1016/j.jsb.2008.12.004. Epub 2008 Dec 24.

PMID:
19138746
6.

Mitochondrial ATP synthase. Crystal structure of the catalytic F1 unit in a vanadate-induced transition-like state and implications for mechanism.

Chen C, Saxena AK, Simcoke WN, Garboczi DN, Pedersen PL, Ko YH.

J Biol Chem. 2006 May 12;281(19):13777-83. Epub 2006 Mar 10.

7.

Structure of the nucleotide-binding subunit B of the energy producer A1A0 ATP synthase in complex with adenosine diphosphate.

Kumar A, Manimekalai MS, Grüber G.

Acta Crystallogr D Biol Crystallogr. 2008 Nov;64(Pt 11):1110-5. doi: 10.1107/S090744490802790X. Epub 2008 Oct 18.

PMID:
19020348
8.

Spectroscopic and crystallographic studies of the mutant R416W give insight into the nucleotide binding traits of subunit B of the A1Ao ATP synthase.

Kumar A, Manimekalai MS, Balakrishna AM, Hunke C, Weigelt S, Sewald N, Grüber G.

Proteins. 2009 Jun;75(4):807-19. doi: 10.1002/prot.22289.

PMID:
19003877
9.
11.
12.

Relevance of the conserved histidine and asparagine residues in the phosphate-binding loop of the nucleotide binding subunit B of A₁A₀ ATP synthases.

Tadwal VS, Sundararaman L, Manimekalai MS, Hunke C, Grüber G.

J Struct Biol. 2012 Dec;180(3):509-18. doi: 10.1016/j.jsb.2012.10.001. Epub 2012 Oct 11.

PMID:
23063756
13.

Crystal structures of biotin protein ligase from Pyrococcus horikoshii OT3 and its complexes: structural basis of biotin activation.

Bagautdinov B, Kuroishi C, Sugahara M, Kunishima N.

J Mol Biol. 2005 Oct 21;353(2):322-33.

PMID:
16169557
14.

Crystal structure of protein Ph1481p in complex with protein Ph1877p of archaeal RNase P from Pyrococcus horikoshii OT3: implication of dimer formation of the holoenzyme.

Kawano S, Nakashima T, Kakuta Y, Tanaka I, Kimura M.

J Mol Biol. 2006 Mar 24;357(2):583-91. Epub 2006 Jan 11.

PMID:
16430919
15.

Investigation of the catalytic site within the ATP-grasp domain of Clostridium symbiosum pyruvate phosphate dikinase.

Ye D, Wei M, McGuire M, Huang K, Kapadia G, Herzberg O, Martin BM, Dunaway-Mariano D.

J Biol Chem. 2001 Oct 5;276(40):37630-9. Epub 2001 Jul 23.

16.

Crystal structure of the ATPPase subunit and its substrate-dependent association with the GATase subunit: a novel regulatory mechanism for a two-subunit-type GMP synthetase from Pyrococcus horikoshii OT3.

Maruoka S, Horita S, Lee WC, Nagata K, Tanokura M.

J Mol Biol. 2010 Jan 15;395(2):417-29. doi: 10.1016/j.jmb.2009.10.053. Epub 2009 Nov 10.

PMID:
19900465
17.

Structure of the catalytic nucleotide-binding subunit A of A-type ATP synthase from Pyrococcus horikoshii reveals a novel domain related to the peripheral stalk.

Maegawa Y, Morita H, Iyaguchi D, Yao M, Watanabe N, Tanaka I.

Acta Crystallogr D Biol Crystallogr. 2006 May;62(Pt 5):483-8. Epub 2006 Apr 19.

PMID:
16627940
18.
19.

A fifth protein subunit Ph1496p elevates the optimum temperature for the ribonuclease P activity from Pyrococcus horikoshii OT3.

Fukuhara H, Kifusa M, Watanabe M, Terada A, Honda T, Numata T, Kakuta Y, Kimura M.

Biochem Biophys Res Commun. 2006 May 12;343(3):956-64. Epub 2006 Mar 15.

PMID:
16574071
20.

The structural basis for unidirectional rotation of thermoalkaliphilic F1-ATPase.

Stocker A, Keis S, Vonck J, Cook GM, Dimroth P.

Structure. 2007 Aug;15(8):904-14.

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