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Items: 1 to 20 of 110

1.

Robust probabilistic superposition and comparison of protein structures.

Mechelke M, Habeck M.

BMC Bioinformatics. 2010 Jul 1;11:363. doi: 10.1186/1471-2105-11-363.

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Objective identification of residue ranges for the superposition of protein structures.

Kirchner DK, G├╝ntert P.

BMC Bioinformatics. 2011 May 18;12:170. doi: 10.1186/1471-2105-12-170.

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What is the probability of a chance prediction of a protein structure with an rmsd of 6 A?

Reva BA, Finkelstein AV, Skolnick J.

Fold Des. 1998;3(2):141-7.

PMID:
9565758
8.

Expected distributions of root-mean-square positional deviations in proteins.

Pitera JW.

J Phys Chem B. 2014 Jun 19;118(24):6526-30. doi: 10.1021/jp412776d. Epub 2014 Mar 21.

PMID:
24655018
9.

MUSTANG-MR structural sieving server: applications in protein structural analysis and crystallography.

Konagurthu AS, Reboul CF, Schmidberger JW, Irving JA, Lesk AM, Stuckey PJ, Whisstock JC, Buckle AM.

PLoS One. 2010 Apr 6;5(4):e10048. doi: 10.1371/journal.pone.0010048.

10.

Overcoming sequence misalignments with weighted structural superposition.

Khazanov NA, Damm-Ganamet KL, Quang DX, Carlson HA.

Proteins. 2012 Nov;80(11):2523-35. doi: 10.1002/prot.24134. Epub 2012 Jul 28.

11.

Mixture models for protein structure ensembles.

Hirsch M, Habeck M.

Bioinformatics. 2008 Oct 1;24(19):2184-92. doi: 10.1093/bioinformatics/btn396. Epub 2008 Jul 28.

PMID:
18662925
12.

Using least median of squares for structural superposition of flexible proteins.

Liu YS, Fang Y, Ramani K.

BMC Bioinformatics. 2009 Jan 22;10:29. doi: 10.1186/1471-2105-10-29.

13.

Defining and computing optimum RMSD for gapped and weighted multiple-structure alignment.

Wang X, Snoeyink J.

IEEE/ACM Trans Comput Biol Bioinform. 2008 Oct-Dec;5(4):525-33. doi: 10.1109/TCBB.2008.92.

PMID:
18989040
14.

A large-scale comparison of computational models on the residue flexibility for NMR-derived proteins.

Zhang H, Shi H, Hanlon M.

Protein Pept Lett. 2012 Feb;19(2):244-51.

PMID:
21933137
15.

A probabilistic model for detecting rigid domains in protein structures.

Nguyen T, Habeck M.

Bioinformatics. 2016 Sep 1;32(17):i710-i717. doi: 10.1093/bioinformatics/btw442.

PMID:
27587693
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Superimposition of protein structures with dynamically weighted RMSD.

Wu D, Wu Z.

J Mol Model. 2010 Feb;16(2):211-22. doi: 10.1007/s00894-009-0538-6. Epub 2009 Jul 1.

PMID:
19568776
18.

Accelerated protein structure comparison using TM-score-GPU.

Hung LH, Samudrala R.

Bioinformatics. 2012 Aug 15;28(16):2191-2. doi: 10.1093/bioinformatics/bts345. Epub 2012 Jun 19.

19.

Statistical validation of the root-mean-square-distance, a measure of protein structural proximity.

Carugo O.

Protein Eng Des Sel. 2007 Jan;20(1):33-7. Epub 2007 Jan 11.

PMID:
17218333
20.

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