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Items: 1 to 20 of 109

1.

Biological knowledge bases using Wikis: combining the flexibility of Wikis with the structure of databases.

Brohée S, Barriot R, Moreau Y.

Bioinformatics. 2010 Sep 1;26(17):2210-1. doi: 10.1093/bioinformatics/btq348. Epub 2010 Jun 30.

PMID:
20591906
2.

The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis.

Li JW, Robison K, Martin M, Sjödin A, Usadel B, Young M, Olivares EC, Bolser DM.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1313-7. doi: 10.1093/nar/gkr1058. Epub 2011 Nov 15.

3.

Processing SPARQL queries with regular expressions in RDF databases.

Lee J, Pham MD, Lee J, Han WS, Cho H, Yu H, Lee JH.

BMC Bioinformatics. 2011 Mar 29;12 Suppl 2:S6. doi: 10.1186/1471-2105-12-S2-S6.

4.

Medical wikis dedicated to clinical practice: a systematic review.

Brulet A, Llorca G, Letrilliart L.

J Med Internet Res. 2015 Feb 19;17(2):e48. doi: /jmir.3574. Review.

5.

Life sciences on the Semantic Web: the Neurocommons and beyond.

Ruttenberg A, Rees JA, Samwald M, Marshall MS.

Brief Bioinform. 2009 Mar;10(2):193-204. doi: 10.1093/bib/bbp004. Epub 2009 Mar 12.

PMID:
19282504
6.

cPath: open source software for collecting, storing, and querying biological pathways.

Cerami EG, Bader GD, Gross BE, Sander C.

BMC Bioinformatics. 2006 Nov 13;7:497.

7.

BioLingua: a programmable knowledge environment for biologists.

Massar JP, Travers M, Elhai J, Shrager J.

Bioinformatics. 2005 Jan 15;21(2):199-207. Epub 2004 Aug 12.

PMID:
15308539
8.

Proteomics FASTA archive and reference resource.

Falkner JA, Hill JA, Andrews PC.

Proteomics. 2008 May;8(9):1756-7. doi: 10.1002/pmic.200701194.

9.

BioWareDB: the biomedical software and database search engine.

Matthiessen MW.

Bioinformatics. 2003 Nov 22;19(17):2319-20.

PMID:
14630664
10.

Bioinformatics software resources.

Gilbert D.

Brief Bioinform. 2004 Sep;5(3):300-4. Review.

PMID:
15383216
11.

Interoperability with Moby 1.0--it's better than sharing your toothbrush!

BioMoby Consortium., Wilkinson MD, Senger M, Kawas E, Bruskiewich R, Gouzy J, Noirot C, Bardou P, Ng A, Haase D, Saiz Ede A, Wang D, Gibbons F, Gordon PM, Sensen CW, Carrasco JM, Fernández JM, Shen L, Links M, Ng M, Opushneva N, Neerincx PB, Leunissen JA, Ernst R, Twigger S, Usadel B, Good B, Wong Y, Stein L, Crosby W, Karlsson J, Royo R, Párraga I, Ramírez S, Gelpi JL, Trelles O, Pisano DG, Jimenez N, Kerhornou A, Rosset R, Zamacola L, Tarraga J, Huerta-Cepas J, Carazo JM, Dopazo J, Guigo R, Navarro A, Orozco M, Valencia A, Claros MG, Pérez AJ, Aldana J, Rojano M, Fernandez-Santa Cruz R, Navas I, Schiltz G, Farmer A, Gessler D, Schoof H, Groscurth A.

Brief Bioinform. 2008 May;9(3):220-31. doi: 10.1093/bib/bbn003. Epub 2008 Jan 31. Review.

PMID:
18238804
12.

BIAS: Bioinformatics Integrated Application Software.

Finak G, Godin N, Hallett M, Pepin F, Rajabi Z, Srivastava V, Tang Z.

Bioinformatics. 2005 Apr 15;21(8):1745-6. Epub 2004 Nov 30.

PMID:
15572471
13.

Semantic data integration and knowledge management to represent biological network associations.

Losko S, Heumann K.

Methods Mol Biol. 2009;563:241-58. doi: 10.1007/978-1-60761-175-2_13.

PMID:
19597789
14.

MetaBasis: a web-based database containing metadata on software tools and databases in the field of bioinformatics.

Atlamazoglou V, Thireou T, Hamodrakas Y, Spyrou G.

Appl Bioinformatics. 2006;5(3):187-92.

PMID:
16922600
15.

A wiki for the life sciences where authorship matters.

Hoffmann R.

Nat Genet. 2008 Sep;40(9):1047-51. doi: 10.1038/ng.f.217.

PMID:
18728691
16.

Ruffus: a lightweight Python library for computational pipelines.

Goodstadt L.

Bioinformatics. 2010 Nov 1;26(21):2778-9. doi: 10.1093/bioinformatics/btq524. Epub 2010 Sep 16.

PMID:
20847218
17.

Brain: biomedical knowledge manipulation.

Croset S, Overington JP, Rebholz-Schuhmann D.

Bioinformatics. 2013 May 1;29(9):1238-9. doi: 10.1093/bioinformatics/btt109. Epub 2013 Mar 16.

18.
19.

Biopython: freely available Python tools for computational molecular biology and bioinformatics.

Cock PJ, Antao T, Chang JT, Chapman BA, Cox CJ, Dalke A, Friedberg I, Hamelryck T, Kauff F, Wilczynski B, de Hoon MJ.

Bioinformatics. 2009 Jun 1;25(11):1422-3. doi: 10.1093/bioinformatics/btp163. Epub 2009 Mar 20.

20.

EcoliWiki: a wiki-based community resource for Escherichia coli.

McIntosh BK, Renfro DP, Knapp GS, Lairikyengbam CR, Liles NM, Niu L, Supak AM, Venkatraman A, Zweifel AE, Siegele DA, Hu JC.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1270-7. doi: 10.1093/nar/gkr880. Epub 2011 Nov 7.

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