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Items: 1 to 20 of 143

1.

Constraint-based model of Shewanella oneidensis MR-1 metabolism: a tool for data analysis and hypothesis generation.

Pinchuk GE, Hill EA, Geydebrekht OV, De Ingeniis J, Zhang X, Osterman A, Scott JH, Reed SB, Romine MF, Konopka AE, Beliaev AS, Fredrickson JK, Reed JL.

PLoS Comput Biol. 2010 Jun 24;6(6):e1000822. doi: 10.1371/journal.pcbi.1000822.

2.

Pyruvate and lactate metabolism by Shewanella oneidensis MR-1 under fermentation, oxygen limitation, and fumarate respiration conditions.

Pinchuk GE, Geydebrekht OV, Hill EA, Reed JL, Konopka AE, Beliaev AS, Fredrickson JK.

Appl Environ Microbiol. 2011 Dec;77(23):8234-40. doi: 10.1128/AEM.05382-11. Epub 2011 Sep 30.

3.

Comparisons of Shewanella strains based on genome annotations, modeling, and experiments.

Ong WK, Vu TT, Lovendahl KN, Llull JM, Serres MH, Romine MF, Reed JL.

BMC Syst Biol. 2014 Mar 12;8:31. doi: 10.1186/1752-0509-8-31.

4.

Formate Metabolism in Shewanella oneidensis Generates Proton Motive Force and Prevents Growth without an Electron Acceptor.

Kane AL, Brutinel ED, Joo H, Maysonet R, VanDrisse CM, Kotloski NJ, Gralnick JA.

J Bacteriol. 2016 Mar 31;198(8):1337-46. doi: 10.1128/JB.00927-15. Print 2016 Apr.

5.

Shewanella oneidensis MR-1 fluxome under various oxygen conditions.

Tang YJ, Hwang JS, Wemmer DE, Keasling JD.

Appl Environ Microbiol. 2007 Feb;73(3):718-29. Epub 2006 Nov 10.

6.

Anaerobic central metabolic pathways in Shewanella oneidensis MR-1 reinterpreted in the light of isotopic metabolite labeling.

Tang YJ, Meadows AL, Kirby J, Keasling JD.

J Bacteriol. 2007 Feb;189(3):894-901. Epub 2006 Nov 17.

7.
8.

Construction and elementary mode analysis of a metabolic model for Shewanella oneidensis MR-1.

Flynn CM, Hunt KA, Gralnick JA, Srienc F.

Biosystems. 2012 Feb;107(2):120-8. doi: 10.1016/j.biosystems.2011.10.003. Epub 2011 Oct 17.

PMID:
22024451
9.

Substrate-level phosphorylation is the primary source of energy conservation during anaerobic respiration of Shewanella oneidensis strain MR-1.

Hunt KA, Flynn JM, Naranjo B, Shikhare ID, Gralnick JA.

J Bacteriol. 2010 Jul;192(13):3345-51. doi: 10.1128/JB.00090-10. Epub 2010 Apr 16.

10.

Integrating flux balance analysis into kinetic models to decipher the dynamic metabolism of Shewanella oneidensis MR-1.

Feng X, Xu Y, Chen Y, Tang YJ.

PLoS Comput Biol. 2012 Feb;8(2):e1002376. doi: 10.1371/journal.pcbi.1002376. Epub 2012 Feb 2.

11.

Growth with high planktonic biomass in Shewanella oneidensis fuel cells.

Lanthier M, Gregory KB, Lovley DR.

FEMS Microbiol Lett. 2008 Jan;278(1):29-35. Epub 2007 Nov 6.

12.

Simultaneous analysis of physiological and electrical output changes in an operating microbial fuel cell with Shewanella oneidensis.

Biffinger JC, Ray R, Little BJ, Fitzgerald LA, Ribbens M, Finkel SE, Ringeisen BR.

Biotechnol Bioeng. 2009 Jun 15;103(3):524-31. doi: 10.1002/bit.22266.

PMID:
19189395
13.

Anaerobic biodecolorization mechanism of methyl orange by Shewanella oneidensis MR-1.

Cai PJ, Xiao X, He YR, Li WW, Chu J, Wu C, He MX, Zhang Z, Sheng GP, Lam MH, Xu F, Yu HQ.

Appl Microbiol Biotechnol. 2012 Feb;93(4):1769-76. doi: 10.1007/s00253-011-3508-8. Epub 2011 Aug 2.

PMID:
21808969
14.

Phenotypic characterization of Shewanella oneidensis MR-1 under aerobic and anaerobic growth conditions by using fourier transform infrared spectroscopy and high-performance liquid chromatography analyses.

Wang H, Hollywood K, Jarvis RM, Lloyd JR, Goodacre R.

Appl Environ Microbiol. 2010 Sep;76(18):6266-76. doi: 10.1128/AEM.00912-10. Epub 2010 Jul 30.

15.

Fnr (EtrA) acts as a fine-tuning regulator of anaerobic metabolism in Shewanella oneidensis MR-1.

Cruz-García C, Murray AE, Rodrigues JL, Gralnick JA, McCue LA, Romine MF, Löffler FE, Tiedje JM.

BMC Microbiol. 2011 Mar 30;11:64. doi: 10.1186/1471-2180-11-64.

16.

Identification of diverse carbon utilization pathways in Shewanella oneidensis MR-1 via expression profiling.

Driscoll ME, Romine MF, Juhn FS, Serres MH, McCue LA, Beliaev AS, Fredrickson JK, Gardner TS.

Genome Inform. 2007;18:287-98.

PMID:
18546496
17.

Analysis of the BarA/UvrY two-component system in Shewanella oneidensis MR-1.

Binnenkade L, Lassak J, Thormann KM.

PLoS One. 2011;6(9):e23440. doi: 10.1371/journal.pone.0023440. Epub 2011 Sep 12.

18.

Towards environmental systems biology of Shewanella.

Fredrickson JK, Romine MF, Beliaev AS, Auchtung JM, Driscoll ME, Gardner TS, Nealson KH, Osterman AL, Pinchuk G, Reed JL, Rodionov DA, Rodrigues JL, Saffarini DA, Serres MH, Spormann AM, Zhulin IB, Tiedje JM.

Nat Rev Microbiol. 2008 Aug;6(8):592-603. doi: 10.1038/nrmicro1947. Epub 2008 Jul 7. Review.

PMID:
18604222
19.

Isobutanol production from an engineered Shewanella oneidensis MR-1.

Jeon JM, Park H, Seo HM, Kim JH, Bhatia SK, Sathiyanarayanan G, Song HS, Park SH, Choi KY, Sang BI, Yang YH.

Bioprocess Biosyst Eng. 2015 Nov;38(11):2147-54. doi: 10.1007/s00449-015-1454-z. Epub 2015 Aug 18.

PMID:
26280214
20.

Shewanella oneidensis MR-1 chemotaxis in a diffusion gradient chamber.

Li R, Auchtung JM, Tiedje JM, Worden RM.

Environ Sci Technol. 2011 Feb 1;45(3):1014-20. doi: 10.1021/es102425p. Epub 2010 Dec 21.

PMID:
21174460

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