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Items: 1 to 20 of 134

1.

Novel topological descriptors for analyzing biological networks.

Dehmer MM, Barbarini NN, Varmuza KK, Graber AA.

BMC Struct Biol. 2010 Jun 17;10:18. doi: 10.1186/1472-6807-10-18.

2.

Structural measures for network biology using QuACN.

Mueller LA, Kugler KG, Graber A, Emmert-Streib F, Dehmer M.

BMC Bioinformatics. 2011 Dec 24;12:492. doi: 10.1186/1471-2105-12-492.

3.

A network-based approach to classify the three domains of life.

Mueller LA, Kugler KG, Netzer M, Graber A, Dehmer M.

Biol Direct. 2011 Oct 13;6:53. doi: 10.1186/1745-6150-6-53.

4.
5.

A large scale analysis of information-theoretic network complexity measures using chemical structures.

Dehmer M, Barbarini N, Varmuza K, Graber A.

PLoS One. 2009 Dec 15;4(12):e8057. doi: 10.1371/journal.pone.0008057.

6.

Structural discrimination of networks by using distance, degree and eigenvalue-based measures.

Dehmer M, Grabner M, Furtula B.

PLoS One. 2012;7(7):e38564. doi: 10.1371/journal.pone.0038564. Epub 2012 Jul 6.

7.

A novel representation of RNA secondary structure based on element-contact graphs.

Shu W, Bo X, Zheng Z, Wang S.

BMC Bioinformatics. 2008 Apr 11;9:188. doi: 10.1186/1471-2105-9-188.

8.

Information indices with high discriminative power for graphs.

Dehmer M, Grabner M, Varmuza K.

PLoS One. 2012;7(2):e31214. doi: 10.1371/journal.pone.0031214. Epub 2012 Feb 29.

9.

Entropy bounds for hierarchical molecular networks.

Dehmer M, Borgert S, Emmert-Streib F.

PLoS One. 2008 Aug 28;3(8):e3079. doi: 10.1371/journal.pone.0003079.

10.

Discrete Derivatives for Atom-Pairs as a Novel Graph-Theoretical Invariant for Generating New Molecular Descriptors: Orthogonality, Interpretation and QSARs/QSPRs on Benchmark Databases.

Martínez-Santiago O, Millán-Cabrera R, Marrero-Ponce Y, Barigye SJ, Martínez-López Y, Torrens F, Pérez-Giménez F.

Mol Inform. 2014 May;33(5):343-68. doi: 10.1002/minf.201300173. Epub 2014 May 12.

PMID:
27485891
11.

New Markov-Shannon Entropy models to assess connectivity quality in complex networks: from molecular to cellular pathway, Parasite-Host, Neural, Industry, and Legal-Social networks.

Riera-Fernández P, Munteanu CR, Escobar M, Prado-Prado F, Martín-Romalde R, Pereira D, Villalba K, Duardo-Sánchez A, González-Díaz H.

J Theor Biol. 2012 Jan 21;293:174-88. doi: 10.1016/j.jtbi.2011.10.016. Epub 2011 Oct 25.

PMID:
22037044
12.

Discriminating different classes of biological networks by analyzing the graphs spectra distribution.

Takahashi DY, Sato JR, Ferreira CE, Fujita A.

PLoS One. 2012;7(12):e49949. doi: 10.1371/journal.pone.0049949. Epub 2012 Dec 19.

13.

Methods of information theory and algorithmic complexity for network biology.

Zenil H, Kiani NA, Tegnér J.

Semin Cell Dev Biol. 2016 Mar;51:32-43. doi: 10.1016/j.semcdb.2016.01.011. Epub 2016 Jan 21. Review.

PMID:
26802516
14.

Indices of differences of path lengths: novel topological descriptors derived from electronic interferences in graphs.

Gálvez J, Garcia-Domenech R, de Gregorio-Alapont C.

J Comput Aided Mol Des. 2000 Oct;14(7):679-87.

PMID:
11008889
15.

Recent developments in quantitative graph theory: information inequalities for networks.

Dehmer M, Sivakumar L.

PLoS One. 2012;7(2):e31395. doi: 10.1371/journal.pone.0031395. Epub 2012 Feb 15.

16.

SING: subgraph search in non-homogeneous graphs.

Di Natale R, Ferro A, Giugno R, Mongiovì M, Pulvirenti A, Shasha D.

BMC Bioinformatics. 2010 Feb 19;11:96. doi: 10.1186/1471-2105-11-96.

17.

Interrelations of graph distance measures based on topological indices.

Dehmer M, Emmert-Streib F, Shi Y.

PLoS One. 2014 Apr 23;9(4):e94985. doi: 10.1371/journal.pone.0094985. eCollection 2014.

18.

Derivatives in discrete mathematics: a novel graph-theoretical invariant for generating new 2/3D molecular descriptors. I. Theory and QSPR application.

Marrero-Ponce Y, Santiago OM, López YM, Barigye SJ, Torrens F.

J Comput Aided Mol Des. 2012 Nov;26(11):1229-46. doi: 10.1007/s10822-012-9591-9. Epub 2012 Nov 4.

PMID:
23124489
19.
20.

Structural information content of networks: graph entropy based on local vertex functionals.

Dehmer M, Emmert-Streib F.

Comput Biol Chem. 2008 Apr;32(2):131-8. doi: 10.1016/j.compbiolchem.2007.09.007. Epub 2007 Sep 29.

PMID:
18243802

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