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Items: 1 to 20 of 116

1.

Methods in DNA methylation profiling.

Zuo T, Tycko B, Liu TM, Lin JJ, Huang TH.

Epigenomics. 2009 Dec;1(2):331-45. doi: 10.2217/epi.09.31. Review.

2.

Analyzing the cancer methylome through targeted bisulfite sequencing.

Lee EJ, Luo J, Wilson JM, Shi H.

Cancer Lett. 2013 Nov 1;340(2):171-8. doi: 10.1016/j.canlet.2012.10.040. Epub 2012 Nov 28. Review.

3.

Combining MeDIP-seq and MRE-seq to investigate genome-wide CpG methylation.

Li D, Zhang B, Xing X, Wang T.

Methods. 2015 Jan 15;72:29-40. doi: 10.1016/j.ymeth.2014.10.032. Epub 2014 Nov 6.

4.

EFEMP1 as a novel DNA methylation marker for prostate cancer: array-based DNA methylation and expression profiling.

Kim YJ, Yoon HY, Kim SK, Kim YW, Kim EJ, Kim IY, Kim WJ.

Clin Cancer Res. 2011 Jul 1;17(13):4523-30. doi: 10.1158/1078-0432.CCR-10-2817. Epub 2011 May 13.

5.

Genome-wide methylation and expression profiling identifies promoter characteristics affecting demethylation-induced gene up-regulation in melanoma.

Rubinstein JC, Tran N, Ma S, Halaban R, Krauthammer M.

BMC Med Genomics. 2010 Feb 9;3:4. doi: 10.1186/1755-8794-3-4.

6.

Genome-wide DNA methylation profiling using InfiniumĀ® assay.

Bibikova M, Le J, Barnes B, Saedinia-Melnyk S, Zhou L, Shen R, Gunderson KL.

Epigenomics. 2009 Oct;1(1):177-200. doi: 10.2217/epi.09.14.

7.

High density DNA methylation array with single CpG site resolution.

Bibikova M, Barnes B, Tsan C, Ho V, Klotzle B, Le JM, Delano D, Zhang L, Schroth GP, Gunderson KL, Fan JB, Shen R.

Genomics. 2011 Oct;98(4):288-95. doi: 10.1016/j.ygeno.2011.07.007. Epub 2011 Aug 2.

8.

Targeted DNA methylation analysis by next-generation sequencing.

Masser DR, Stanford DR, Freeman WM.

J Vis Exp. 2015 Feb 24;(96). doi: 10.3791/52488.

9.
10.

Sequencing the cancer methylome.

Shull AY, Noonepalle SK, Lee EJ, Choi JH, Shi H.

Methods Mol Biol. 2015;1238:627-51. doi: 10.1007/978-1-4939-1804-1_33. Review.

PMID:
25421684
11.

Genome-scale DNA methylation analysis.

Fouse SD, Nagarajan RO, Costello JF.

Epigenomics. 2010 Feb;2(1):105-17. doi: 10.2217/epi.09.35. Review.

12.

DBCAT: database of CpG islands and analytical tools for identifying comprehensive methylation profiles in cancer cells.

Kuo HC, Lin PY, Chung TC, Chao CM, Lai LC, Tsai MH, Chuang EY.

J Comput Biol. 2011 Aug;18(8):1013-7. doi: 10.1089/cmb.2010.0038. Epub 2011 Jan 8.

PMID:
21214365
13.

Global DNA methylation profiling technologies and the ovarian cancer methylome.

Tang J, Fang F, Miller DF, Pilrose JM, Matei D, Huang TH, Nephew KP.

Methods Mol Biol. 2015;1238:653-75. doi: 10.1007/978-1-4939-1804-1_34. Review.

PMID:
25421685
14.

Methylation profiling using methylated DNA immunoprecipitation and tiling array hybridization.

Cheung HH, Lee TL, Rennert OM, Chan WY.

Methods Mol Biol. 2012;825:115-26. doi: 10.1007/978-1-61779-436-0_10.

15.

Genome-wide DNA methylome variation in two genetically distinct chicken lines using MethylC-seq.

Li J, Li R, Wang Y, Hu X, Zhao Y, Li L, Feng C, Gu X, Liang F, Lamont SJ, Hu S, Zhou H, Li N.

BMC Genomics. 2015 Oct 23;16:851. doi: 10.1186/s12864-015-2098-8.

16.

Studying the epigenome using next generation sequencing.

Ku CS, Naidoo N, Wu M, Soong R.

J Med Genet. 2011 Nov;48(11):721-30. doi: 10.1136/jmedgenet-2011-100242. Epub 2011 Aug 8. Review.

PMID:
21825079
17.

Detecting DNA methylation using the methylated CpG island amplification and microarray technique.

Colyer HA, Dellett M, Mills KI.

Methods Mol Biol. 2012;863:329-39. doi: 10.1007/978-1-61779-612-8_21.

PMID:
22359304
18.

Whole-genome DNA methylation profiling with nucleotide resolution.

Hsieh TF.

Methods Mol Biol. 2015;1284:27-40. doi: 10.1007/978-1-4939-2444-8_2.

PMID:
25757766
19.

Comparison of sequencing-based methods to profile DNA methylation and identification of monoallelic epigenetic modifications.

Harris RA, Wang T, Coarfa C, Nagarajan RP, Hong C, Downey SL, Johnson BE, Fouse SD, Delaney A, Zhao Y, Olshen A, Ballinger T, Zhou X, Forsberg KJ, Gu J, Echipare L, O'Geen H, Lister R, Pelizzola M, Xi Y, Epstein CB, Bernstein BE, Hawkins RD, Ren B, Chung WY, Gu H, Bock C, Gnirke A, Zhang MQ, Haussler D, Ecker JR, Li W, Farnham PJ, Waterland RA, Meissner A, Marra MA, Hirst M, Milosavljevic A, Costello JF.

Nat Biotechnol. 2010 Oct;28(10):1097-105. doi: 10.1038/nbt.1682. Epub 2010 Sep 19.

20.

DNA methylation profiling in zebrafish.

Wu SF, Zhang H, Hammoud SS, Potok M, Nix DA, Jones DA, Cairns BR.

Methods Cell Biol. 2011;104:327-39. doi: 10.1016/B978-0-12-374814-0.00018-5.

PMID:
21924171

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