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Items: 1 to 20 of 91

1.

Identifying gene clusters within localized regions in multiple genomes.

Yang Q, Yi G, Zhang F, Thon MR, Sze SH.

J Comput Biol. 2010 May;17(5):657-68. doi: 10.1089/cmb.2009.0116.

PMID:
20500020
2.

Large-scale analysis of gene clustering in bacteria.

Yang Q, Sze SH.

Genome Res. 2008 Jun;18(6):949-56. doi: 10.1101/gr.072322.107. Epub 2008 Apr 4.

3.

Detecting gene clusters under evolutionary constraint in a large number of genomes.

Ling X, He X, Xin D.

Bioinformatics. 2009 Mar 1;25(5):571-7. doi: 10.1093/bioinformatics/btp027. Epub 2009 Jan 21.

PMID:
19158161
4.

Identifying clusters of functionally related genes in genomes.

Yi G, Sze SH, Thon MR.

Bioinformatics. 2007 May 1;23(9):1053-60. Epub 2007 Jan 19.

PMID:
17237058
5.

Gene cluster statistics with gene families.

Raghupathy N, Durand D.

Mol Biol Evol. 2009 May;26(5):957-68. doi: 10.1093/molbev/msp002. Epub 2009 Jan 15.

6.

OrthoMCL: identification of ortholog groups for eukaryotic genomes.

Li L, Stoeckert CJ Jr, Roos DS.

Genome Res. 2003 Sep;13(9):2178-89.

8.

Automatic detection of conserved gene clusters in multiple genomes by graph comparison and P-quasi grouping.

Fujibuchi W, Ogata H, Matsuda H, Kanehisa M.

Nucleic Acids Res. 2000 Oct 15;28(20):4029-36.

9.

Finding approximate gene clusters with Gecko 3.

Winter S, Jahn K, Wehner S, Kuchenbecker L, Marz M, Stoye J, Böcker S.

Nucleic Acids Res. 2016 Nov 16;44(20):9600-9610. Epub 2016 Sep 26.

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11.

Gene team tree: a hierarchical representation of gene teams for all gap lengths.

Zhang M, Leong HW.

J Comput Biol. 2009 Oct;16(10):1383-98. doi: 10.1089/cmb.2009.0093.

PMID:
19803736
12.

Identification of conserved gene clusters in multiple genomes based on synteny and homology.

Sarkar A, Soueidan H, Nikolski M.

BMC Bioinformatics. 2011 Oct 5;12 Suppl 9:S18. doi: 10.1186/1471-2105-12-S9-S18.

13.

Identifying gene clusters by discovering common intervals in indeterminate strings.

Doerr D, Stoye J, Böcker S, Jahn K.

BMC Genomics. 2014;15 Suppl 6:S2. doi: 10.1186/1471-2164-15-S6-S2. Epub 2014 Oct 17.

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PhyloGibbs: a Gibbs sampling motif finder that incorporates phylogeny.

Siddharthan R, Siggia ED, van Nimwegen E.

PLoS Comput Biol. 2005 Dec;1(7):e67. Epub 2005 Dec 9.

16.

PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes.

Fong C, Rohmer L, Radey M, Wasnick M, Brittnacher MJ.

BMC Bioinformatics. 2008 Mar 26;9:170. doi: 10.1186/1471-2105-9-170.

17.

Identifying conserved gene clusters in the presence of homology families.

He X, Goldwasser MH.

J Comput Biol. 2005 Jul-Aug;12(6):638-56.

PMID:
16108708
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20.

A heuristic graph comparison algorithm and its application to detect functionally related enzyme clusters.

Ogata H, Fujibuchi W, Goto S, Kanehisa M.

Nucleic Acids Res. 2000 Oct 15;28(20):4021-8.

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