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Comparative genomics of cyclic-di-GMP signalling in bacteria: post-translational regulation and catalytic activity.

Seshasayee AS, Fraser GM, Luscombe NM.

Nucleic Acids Res. 2010 Oct;38(18):5970-81. doi: 10.1093/nar/gkq382. Epub 2010 May 18.


GGDEF and EAL domains inversely regulate cyclic di-GMP levels and transition from sessility to motility.

Simm R, Morr M, Kader A, Nimtz M, Römling U.

Mol Microbiol. 2004 Aug;53(4):1123-34.


The functional role of a conserved loop in EAL domain-based cyclic di-GMP-specific phosphodiesterase.

Rao F, Qi Y, Chong HS, Kotaka M, Li B, Li J, Lescar J, Tang K, Liang ZX.

J Bacteriol. 2009 Aug;191(15):4722-31. doi: 10.1128/JB.00327-09. Epub 2009 Apr 17.


Identification and characterization of a cyclic di-GMP-specific phosphodiesterase and its allosteric control by GTP.

Christen M, Christen B, Folcher M, Schauerte A, Jenal U.

J Biol Chem. 2005 Sep 2;280(35):30829-37. Epub 2005 Jul 1.


Genome-Based Comparison of Cyclic Di-GMP Signaling in Pathogenic and Commensal Escherichia coli Strains.

Povolotsky TL, Hengge R.

J Bacteriol. 2015 Aug 24;198(1):111-26. doi: 10.1128/JB.00520-15.


Identification, activity and disulfide connectivity of C-di-GMP regulating proteins in Mycobacterium tuberculosis.

Gupta K, Kumar P, Chatterji D.

PLoS One. 2010 Nov 30;5(11):e15072. doi: 10.1371/journal.pone.0015072.


c-di-GMP turn-over in Clostridium difficile is controlled by a plethora of diguanylate cyclases and phosphodiesterases.

Bordeleau E, Fortier LC, Malouin F, Burrus V.

PLoS Genet. 2011 Mar;7(3):e1002039. doi: 10.1371/journal.pgen.1002039. Epub 2011 Mar 31.


The EAL domain protein VieA is a cyclic diguanylate phosphodiesterase.

Tamayo R, Tischler AD, Camilli A.

J Biol Chem. 2005 Sep 30;280(39):33324-30. Epub 2005 Aug 4.


Comparative analysis of diguanylate cyclase and phosphodiesterase genes in Klebsiella pneumoniae.

Cruz DP, Huertas MG, Lozano M, Zárate L, Zambrano MM.

BMC Microbiol. 2012 Jul 9;12:139. doi: 10.1186/1471-2180-12-139.


Catalytic mechanism of cyclic di-GMP-specific phosphodiesterase: a study of the EAL domain-containing RocR from Pseudomonas aeruginosa.

Rao F, Yang Y, Qi Y, Liang ZX.

J Bacteriol. 2008 May;190(10):3622-31. doi: 10.1128/JB.00165-08. Epub 2008 Mar 14.


Cyclic-di-GMP-mediated signalling within the sigma network of Escherichia coli.

Weber H, Pesavento C, Possling A, Tischendorf G, Hengge R.

Mol Microbiol. 2006 Nov;62(4):1014-34. Epub 2006 Sep 29.


Sensing the messenger: the diverse ways that bacteria signal through c-di-GMP.

Krasteva PV, Giglio KM, Sondermann H.

Protein Sci. 2012 Jul;21(7):929-48. doi: 10.1002/pro.2093. Epub 2012 Jun 5. Review.


Oligoribonuclease is a central feature of cyclic diguanylate signaling in Pseudomonas aeruginosa.

Cohen D, Mechold U, Nevenzal H, Yarmiyhu Y, Randall TE, Bay DC, Rich JD, Parsek MR, Kaever V, Harrison JJ, Banin E.

Proc Natl Acad Sci U S A. 2015 Sep 8;112(36):11359-64. doi: 10.1073/pnas.1421450112. Epub 2015 Aug 24.


Crystal structures of YkuI and its complex with second messenger cyclic Di-GMP suggest catalytic mechanism of phosphodiester bond cleavage by EAL domains.

Minasov G, Padavattan S, Shuvalova L, Brunzelle JS, Miller DJ, Baslé A, Massa C, Collart FR, Schirmer T, Anderson WF.

J Biol Chem. 2009 May 8;284(19):13174-84. doi: 10.1074/jbc.M808221200. Epub 2009 Feb 24.


Cyclic diguanylate turnover mediated by the sole GGDEF/EAL response regulator in Pseudomonas putida: its role in the rhizosphere and an analysis of its target processes.

Matilla MA, Travieso ML, Ramos JL, Ramos-González MI.

Environ Microbiol. 2011 Jul;13(7):1745-66. doi: 10.1111/j.1462-2920.2011.02499.x. Epub 2011 May 9.


An oxygen-sensing diguanylate cyclase and phosphodiesterase couple for c-di-GMP control.

Tuckerman JR, Gonzalez G, Sousa EH, Wan X, Saito JA, Alam M, Gilles-Gonzalez MA.

Biochemistry. 2009 Oct 20;48(41):9764-74. doi: 10.1021/bi901409g.


Structural insight into the mechanism of c-di-GMP hydrolysis by EAL domain phosphodiesterases.

Tchigvintsev A, Xu X, Singer A, Chang C, Brown G, Proudfoot M, Cui H, Flick R, Anderson WF, Joachimiak A, Galperin MY, Savchenko A, Yakunin AF.

J Mol Biol. 2010 Sep 24;402(3):524-38. doi: 10.1016/j.jmb.2010.07.050. Epub 2010 Aug 4.


Analysis of Pseudomonas aeruginosa diguanylate cyclases and phosphodiesterases reveals a role for bis-(3'-5')-cyclic-GMP in virulence.

Kulasakara H, Lee V, Brencic A, Liberati N, Urbach J, Miyata S, Lee DG, Neely AN, Hyodo M, Hayakawa Y, Ausubel FM, Lory S.

Proc Natl Acad Sci U S A. 2006 Feb 21;103(8):2839-44. Epub 2006 Feb 13.

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