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Items: 1 to 20 of 118

1.

PoGO: Prediction of Gene Ontology terms for fungal proteins.

Jung J, Yi G, Sukno SA, Thon MR.

BMC Bioinformatics. 2010 Apr 29;11:215. doi: 10.1186/1471-2105-11-215.

2.

Gene Ontology annotation of the rice blast fungus, Magnaporthe oryzae.

Meng S, Brown DE, Ebbole DJ, Torto-Alalibo T, Oh YY, Deng J, Mitchell TK, Dean RA.

BMC Microbiol. 2009 Feb 19;9 Suppl 1:S8. doi: 10.1186/1471-2180-9-S1-S8. Review.

3.

Protein function prediction using text-based features extracted from the biomedical literature: the CAFA challenge.

Wong A, Shatkay H.

BMC Bioinformatics. 2013;14 Suppl 3:S14. doi: 10.1186/1471-2105-14-S3-S14. Epub 2013 Feb 28.

4.

Gene ontology based transfer learning for protein subcellular localization.

Mei S, Fei W, Zhou S.

BMC Bioinformatics. 2011 Feb 2;12:44. doi: 10.1186/1471-2105-12-44.

5.

Hum-PLoc: a novel ensemble classifier for predicting human protein subcellular localization.

Chou KC, Shen HB.

Biochem Biophys Res Commun. 2006 Aug 18;347(1):150-7. Epub 2006 Jun 21. Erratum in: Biochem Biophys Res Commun. 2006 Oct 6;348(4):1479.

PMID:
16808903
6.
7.

ProLoc-GO: utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization.

Huang WL, Tung CW, Ho SW, Hwang SF, Ho SY.

BMC Bioinformatics. 2008 Feb 1;9:80. doi: 10.1186/1471-2105-9-80.

8.

Automated Gene Ontology annotation for anonymous sequence data.

Hennig S, Groth D, Lehrach H.

Nucleic Acids Res. 2003 Jul 1;31(13):3712-5.

9.

MIPS: analysis and annotation of genome information in 2007.

Mewes HW, Dietmann S, Frishman D, Gregory R, Mannhaupt G, Mayer KF, Münsterkötter M, Ruepp A, Spannagl M, Stümpflen V, Rattei T.

Nucleic Acids Res. 2008 Jan;36(Database issue):D196-201. Epub 2007 Dec 23.

10.

Automated methods of predicting the function of biological sequences using GO and BLAST.

Jones CE, Baumann U, Brown AL.

BMC Bioinformatics. 2005 Nov 15;6:272.

11.

Mapping Gene Ontology to proteins based on protein-protein interaction data.

Deng M, Tu Z, Sun F, Chen T.

Bioinformatics. 2004 Apr 12;20(6):895-902. Epub 2004 Jan 29.

PMID:
14751964
13.

The development of PIPA: an integrated and automated pipeline for genome-wide protein function annotation.

Yu C, Zavaljevski N, Desai V, Johnson S, Stevens FJ, Reifman J.

BMC Bioinformatics. 2008 Jan 25;9:52. doi: 10.1186/1471-2105-9-52.

14.
15.

Prediction of protein function from protein sequence and structure.

Whisstock JC, Lesk AM.

Q Rev Biophys. 2003 Aug;36(3):307-40. Review.

PMID:
15029827
16.

Comparing genomes in terms of protein structure: surveys of a finite parts list.

Gerstein M, Hegyi H.

FEMS Microbiol Rev. 1998 Oct;22(4):277-304. Review.

17.

ESG: extended similarity group method for automated protein function prediction.

Chitale M, Hawkins T, Park C, Kihara D.

Bioinformatics. 2009 Jul 15;25(14):1739-45. doi: 10.1093/bioinformatics/btp309. Epub 2009 May 12.

18.

Rapid annotation of anonymous sequences from genome projects using semantic similarities and a weighting scheme in gene ontology.

Fontana P, Cestaro A, Velasco R, Formentin E, Toppo S.

PLoS One. 2009;4(2):e4619. doi: 10.1371/journal.pone.0004619. Epub 2009 Feb 27.

19.

ConFunc--functional annotation in the twilight zone.

Wass MN, Sternberg MJ.

Bioinformatics. 2008 Mar 15;24(6):798-806. doi: 10.1093/bioinformatics/btn037. Epub 2008 Feb 8.

PMID:
18263643
20.

Ranking Gene Ontology terms for predicting non-classical secretory proteins in eukaryotes and prokaryotes.

Huang WL.

J Theor Biol. 2012 Nov 7;312:105-13. doi: 10.1016/j.jtbi.2012.07.027. Epub 2012 Aug 8.

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