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Items: 1 to 20 of 135

1.

One bacterial cell, one complete genome.

Woyke T, Tighe D, Mavromatis K, Clum A, Copeland A, Schackwitz W, Lapidus A, Wu D, McCutcheon JP, McDonald BR, Moran NA, Bristow J, Cheng JF.

PLoS One. 2010 Apr 23;5(4):e10314. doi: 10.1371/journal.pone.0010314.

2.

Nearly finished genomes produced using gel microdroplet culturing reveal substantial intraspecies genomic diversity within the human microbiome.

Fitzsimons MS, Novotny M, Lo CC, Dichosa AE, Yee-Greenbaum JL, Snook JP, Gu W, Chertkov O, Davenport KW, McMurry K, Reitenga KG, Daughton AR, He J, Johnson SL, Gleasner CD, Wills PL, Parson-Quintana B, Chain PS, Detter JC, Lasken RS, Han CS.

Genome Res. 2013 May;23(5):878-88. doi: 10.1101/gr.142208.112. Epub 2013 Mar 14.

3.

Whole-genome sequencing of unculturable bacterium using whole-genome amplification.

Hongoh Y, Toyoda A.

Methods Mol Biol. 2011;733:25-33. doi: 10.1007/978-1-61779-089-8_2.

PMID:
21431760
4.

Whole genome amplification and de novo assembly of single bacterial cells.

Rodrigue S, Malmstrom RR, Berlin AM, Birren BW, Henn MR, Chisholm SW.

PLoS One. 2009 Sep 2;4(9):e6864. doi: 10.1371/journal.pone.0006864.

5.

Genomic sequencing of single microbial cells from environmental samples.

Ishoey T, Woyke T, Stepanauskas R, Novotny M, Lasken RS.

Curr Opin Microbiol. 2008 Jun;11(3):198-204. doi: 10.1016/j.mib.2008.05.006. Epub 2008 Jun 10. Review.

6.

Development of microbial genome-probing microarrays using digital multiple displacement amplification of uncultivated microbial single cells.

Chang HW, Sung Y, Kim KH, Nam YD, Roh SW, Kim MS, Jeon CO, Bae JW.

Environ Sci Technol. 2008 Aug 15;42(16):6058-64. Erratum in: Environ Sci Technol. 2008 Nov 15;42(22):8614.

PMID:
18767666
7.

Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a time.

Stepanauskas R, Sieracki ME.

Proc Natl Acad Sci U S A. 2007 May 22;104(21):9052-7. Epub 2007 May 14.

8.

Monodisperse Picoliter Droplets for Low-Bias and Contamination-Free Reactions in Single-Cell Whole Genome Amplification.

Nishikawa Y, Hosokawa M, Maruyama T, Yamagishi K, Mori T, Takeyama H.

PLoS One. 2015 Sep 21;10(9):e0138733. doi: 10.1371/journal.pone.0138733. eCollection 2015.

9.

Assembling the marine metagenome, one cell at a time.

Woyke T, Xie G, Copeland A, González JM, Han C, Kiss H, Saw JH, Senin P, Yang C, Chatterji S, Cheng JF, Eisen JA, Sieracki ME, Stepanauskas R.

PLoS One. 2009;4(4):e5299. doi: 10.1371/journal.pone.0005299. Epub 2009 Apr 23.

10.

Single-cell genomic sequencing using Multiple Displacement Amplification.

Lasken RS.

Curr Opin Microbiol. 2007 Oct;10(5):510-6. Epub 2007 Oct 17. Review.

PMID:
17923430
11.

High-resolution metagenomics targets specific functional types in complex microbial communities.

Kalyuzhnaya MG, Lapidus A, Ivanova N, Copeland AC, McHardy AC, Szeto E, Salamov A, Grigoriev IV, Suciu D, Levine SR, Markowitz VM, Rigoutsos I, Tringe SG, Bruce DC, Richardson PM, Lidstrom ME, Chistoserdova L.

Nat Biotechnol. 2008 Sep;26(9):1029-34. doi: 10.1038/nbt.1488.

PMID:
18711340
12.

Picodroplet partitioned whole genome amplification of low biomass samples preserves genomic diversity for metagenomic analysis.

Hammond M, Homa F, Andersson-Svahn H, Ettema TJ, Joensson HN.

Microbiome. 2016 Oct 6;4(1):52.

13.

Differential genome evolution between companion symbionts in an insect-bacterial symbiosis.

Bennett GM, McCutcheon JP, MacDonald BR, Romanovicz D, Moran NA.

MBio. 2014 Sep 30;5(5):e01697-14. doi: 10.1128/mBio.01697-14.

14.

Environmental whole-genome amplification to access microbial populations in contaminated sediments.

Abulencia CB, Wyborski DL, Garcia JA, Podar M, Chen W, Chang SH, Chang HW, Watson D, Brodie EL, Hazen TC, Keller M.

Appl Environ Microbiol. 2006 May;72(5):3291-301.

15.

Generating whole bacterial genome sequences of low-abundance species from complex samples with IMS-MDA.

Seth-Smith HM, Harris SR, Scott P, Parmar S, Marsh P, Unemo M, Clarke IN, Parkhill J, Thomson NR.

Nat Protoc. 2013 Dec;8(12):2404-12. doi: 10.1038/nprot.2013.147. Epub 2013 Nov 7.

PMID:
24202554
16.

A quantitative comparison of single-cell whole genome amplification methods.

de Bourcy CF, De Vlaminck I, Kanbar JN, Wang J, Gawad C, Quake SR.

PLoS One. 2014 Aug 19;9(8):e105585. doi: 10.1371/journal.pone.0105585. eCollection 2014.

17.

Assessment of REPLI-g Multiple Displacement Whole Genome Amplification (WGA) Techniques for Metagenomic Applications.

Ahsanuddin S, Afshinnekoo E, Gandara J, Hakyemezoğlu M, Bezdan D, Minot S, Greenfield N, Mason CE.

J Biomol Tech. 2017 Apr;28(1):46-55. doi: 10.7171/jbt.17-2801-008. Epub 2017 Mar 21. Erratum in: J Biomol Tech. 2017 Jul;28(2):96.

18.

Obtaining genomes from uncultivated environmental microorganisms using FACS-based single-cell genomics.

Rinke C, Lee J, Nath N, Goudeau D, Thompson B, Poulton N, Dmitrieff E, Malmstrom R, Stepanauskas R, Woyke T.

Nat Protoc. 2014 May;9(5):1038-48. doi: 10.1038/nprot.2014.067. Epub 2014 Apr 10.

PMID:
24722403
19.

Single-cell genomics of uncultivated deep-branching magnetotactic bacteria reveals a conserved set of magnetosome genes.

Kolinko S, Richter M, Glöckner FO, Brachmann A, Schüler D.

Environ Microbiol. 2016 Jan;18(1):21-37. doi: 10.1111/1462-2920.12907. Epub 2015 Jul 30.

PMID:
26060021
20.

Efficient de novo assembly of single-cell bacterial genomes from short-read data sets.

Chitsaz H, Yee-Greenbaum JL, Tesler G, Lombardo MJ, Dupont CL, Badger JH, Novotny M, Rusch DB, Fraser LJ, Gormley NA, Schulz-Trieglaff O, Smith GP, Evers DJ, Pevzner PA, Lasken RS.

Nat Biotechnol. 2011 Sep 18;29(10):915-21. doi: 10.1038/nbt.1966.

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