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Items: 1 to 20 of 68

1.
2.

Relationship between global structural parameters and Enzyme Commission hierarchy: implications for function prediction.

Boareto M, Yamagishi ME, Caticha N, Leite VB.

Comput Biol Chem. 2012 Oct;40:15-9. doi: 10.1016/j.compbiolchem.2012.06.003. Epub 2012 Aug 14.

PMID:
22926016
3.

Decomposition of metabolic network into functional modules based on the global connectivity structure of reaction graph.

Ma HW, Zhao XM, Yuan YJ, Zeng AP.

Bioinformatics. 2004 Aug 12;20(12):1870-6. Epub 2004 Mar 22.

4.

Hierarchical analysis of dependency in metabolic networks.

Gagneur J, Jackson DB, Casari G.

Bioinformatics. 2003 May 22;19(8):1027-34.

5.

Classification of chemical reactions and chemoinformatic processing of enzymatic transformations.

Latino DA, Aires-de-Sousa J.

Methods Mol Biol. 2011;672:325-40. doi: 10.1007/978-1-60761-839-3_13.

PMID:
20838975
6.

A structural census of metabolic networks for E. coli.

Saqi MA, Sternberg MJ.

J Mol Biol. 2001 Nov 9;313(5):1195-206.

PMID:
11700074
7.

A ligand-centric analysis of the diversity and evolution of protein-ligand relationships in E.coli.

Nobeli I, Spriggs RV, George RA, Thornton JM.

J Mol Biol. 2005 Mar 25;347(2):415-36.

PMID:
15740750
8.

Comparison of the small molecule metabolic enzymes of Escherichia coli and Saccharomyces cerevisiae.

Jardine O, Gough J, Chothia C, Teichmann SA.

Genome Res. 2002 Jun;12(6):916-29.

9.

Protein abundance profiling of the Escherichia coli cytosol.

Ishihama Y, Schmidt T, Rappsilber J, Mann M, Hartl FU, Kerner MJ, Frishman D.

BMC Genomics. 2008 Feb 27;9:102. doi: 10.1186/1471-2164-9-102.

10.

Escherichia coli--a model system that benefits from and contributes to the evolution of proteomics.

Lee PS, Lee KH.

Biotechnol Bioeng. 2003 Dec 30;84(7):801-14. Review.

PMID:
14708121
11.

Ureide catabolism in Arabidopsis thaliana and Escherichia coli.

Werner AK, Romeis T, Witte CP.

Nat Chem Biol. 2010 Jan;6(1):19-21. doi: 10.1038/nchembio.265. Epub 2009 Nov 22.

PMID:
19935661
12.

CoSMoS: Conserved Sequence Motif Search in the proteome.

Liu XI, Korde N, Jakob U, Leichert LI.

BMC Bioinformatics. 2006 Jan 24;7:37.

13.
14.

Model of central and trimethylammonium metabolism for optimizing L-carnitine production by E. coli.

Sevilla A, Schmid JW, Mauch K, Iborra JL, Reuss M, Cánovas M.

Metab Eng. 2005 Sep-Nov;7(5-6):401-25. Epub 2005 Aug 10.

PMID:
16098782
15.

EcoCyc: Enyclopedia of Escherichia coli Genes and Metabolism.

Karp PD, Riley M, Paley SM, Pellegrini-Toole A, Krummenacker M.

Nucleic Acids Res. 1997 Jan 1;25(1):43-51.

16.

Dynamic modeling of the central carbon metabolism of Escherichia coli.

Chassagnole C, Noisommit-Rizzi N, Schmid JW, Mauch K, Reuss M.

Biotechnol Bioeng. 2002 Jul 5;79(1):53-73.

PMID:
17590932
17.

DESHARKY: automatic design of metabolic pathways for optimal cell growth.

Rodrigo G, Carrera J, Prather KJ, Jaramillo A.

Bioinformatics. 2008 Nov 1;24(21):2554-6. doi: 10.1093/bioinformatics/btn471. Epub 2008 Sep 5.

18.

Discovering functional gene expression patterns in the metabolic network of Escherichia coli with wavelets transforms.

König R, Schramm G, Oswald M, Seitz H, Sager S, Zapatka M, Reinelt G, Eils R.

BMC Bioinformatics. 2006 Mar 8;7:119.

19.

Genomic peculiarity of coding sequences and metabolic potential of probiotic Escherichia coli strain Nissle 1917 inferred from raw genome data.

Sun J, Gunzer F, Westendorf AM, Buer J, Scharfe M, Jarek M, Gössling F, Blöcker H, Zeng AP.

J Biotechnol. 2005 May 4;117(2):147-61.

PMID:
15823404
20.

GenProtEC: an updated and improved analysis of functions of Escherichia coli K-12 proteins.

Serres MH, Goswami S, Riley M.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D300-2.

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