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Items: 1 to 20 of 88

1.

Restriction Site Tiling Analysis: accurate discovery and quantitative genotyping of genome-wide polymorphisms using nucleotide arrays.

Pespeni MH, Oliver TA, Manier MK, Palumbi SR.

Genome Biol. 2010;11(4):R44. doi: 10.1186/gb-2010-11-4-r44. Epub 2010 Apr 19.

2.

High-throughput polymorphism screening and genotyping with high-density oligonucleotide arrays.

Sapolsky RJ, Hsie L, Berno A, Ghandour G, Mittmann M, Fan JB.

Genet Anal. 1999 Feb;14(5-6):187-92.

PMID:
10084113
3.

Ocean acidification research in the 'post-genomic' era: Roadmaps from the purple sea urchin Strongylocentrotus purpuratus.

Evans TG, Padilla-Gamiño JL, Kelly MW, Pespeni MH, Chan F, Menge BA, Gaylord B, Hill TM, Russell AD, Palumbi SR, Sanford E, Hofmann GE.

Comp Biochem Physiol A Mol Integr Physiol. 2015 Jul;185:33-42. doi: 10.1016/j.cbpa.2015.03.007. Epub 2015 Mar 13. Review.

PMID:
25773301
4.

Genome-wide polymorphisms show unexpected targets of natural selection.

Pespeni MH, Garfield DA, Manier MK, Palumbi SR.

Proc Biol Sci. 2012 Apr 7;279(1732):1412-20. doi: 10.1098/rspb.2011.1823. Epub 2011 Oct 12.

5.

Applications of DNA tiling arrays for whole-genome analysis.

Mockler TC, Chan S, Sundaresan A, Chen H, Jacobsen SE, Ecker JR.

Genomics. 2005 Jan;85(1):1-15. Review. Erratum in: Genomics. 2005 May;85(5):655. Chan, Simon [added]; Sundaresan, Ambika [added]; Chen, Huaming [added]; Jacobsen, Steven E [added].

PMID:
15607417
6.

SpBase: the sea urchin genome database and web site.

Cameron RA, Samanta M, Yuan A, He D, Davidson E.

Nucleic Acids Res. 2009 Jan;37(Database issue):D750-4. doi: 10.1093/nar/gkn887. Epub 2008 Nov 14.

7.

The transcriptome of the sea urchin embryo.

Samanta MP, Tongprasit W, Istrail S, Cameron RA, Tu Q, Davidson EH, Stolc V.

Science. 2006 Nov 10;314(5801):960-2.

8.

Discovery of novel variants in genotyping arrays improves genotype retention and reduces ascertainment bias.

Didion JP, Yang H, Sheppard K, Fu CP, McMillan L, de Villena FP, Churchill GA.

BMC Genomics. 2012 Jan 19;13:34. doi: 10.1186/1471-2164-13-34.

9.

Signs of adaptation to local pH conditions across an environmental mosaic in the California Current Ecosystem.

Pespeni MH, Chan F, Menge BA, Palumbi SR.

Integr Comp Biol. 2013 Nov;53(5):857-70. doi: 10.1093/icb/ict094. Epub 2013 Aug 26. Review.

PMID:
23980118
10.

Efficient oligonucleotide probe selection for pan-genomic tiling arrays.

Phillippy AM, Deng X, Zhang W, Salzberg SL.

BMC Bioinformatics. 2009 Sep 16;10:293. doi: 10.1186/1471-2105-10-293.

11.

Signals of selection in outlier loci in a widely dispersing species across an environmental mosaic.

Pespeni MH, Palumbi SR.

Mol Ecol. 2013 Jul;22(13):3580-97. doi: 10.1111/mec.12337.

PMID:
23802552
13.

Rapid and cost-effective polymorphism identification and genotyping using restriction site associated DNA (RAD) markers.

Miller MR, Dunham JP, Amores A, Cresko WA, Johnson EA.

Genome Res. 2007 Feb;17(2):240-8. Epub 2006 Dec 22.

14.

Population genomic analysis of Tunisian Medicago truncatula reveals candidates for local adaptation.

Friesen ML, Cordeiro MA, Penmetsa RV, Badri M, Huguet T, Aouani ME, Cook DR, Nuzhdin SV.

Plant J. 2010 Aug;63(4):623-35. doi: 10.1111/j.1365-313X.2010.04267.x.

15.

Diversity arrays technology: a generic genome profiling technology on open platforms.

Kilian A, Wenzl P, Huttner E, Carling J, Xia L, Blois H, Caig V, Heller-Uszynska K, Jaccoud D, Hopper C, Aschenbrenner-Kilian M, Evers M, Peng K, Cayla C, Hok P, Uszynski G.

Methods Mol Biol. 2012;888:67-89. doi: 10.1007/978-1-61779-870-2_5.

PMID:
22665276
16.

Development of the catfish 250K SNP array for genome-wide association studies.

Liu S, Sun L, Li Y, Sun F, Jiang Y, Zhang Y, Zhang J, Feng J, Kaltenboeck L, Kucuktas H, Liu Z.

BMC Res Notes. 2014 Mar 10;7:135. doi: 10.1186/1756-0500-7-135.

17.

A MITE-based genotyping method to reveal hundreds of DNA polymorphisms in an animal genome after a few generations of artificial selection.

Bonin A, Paris M, Després L, Tetreau G, David JP, Kilian A.

BMC Genomics. 2008 Oct 6;9:459. doi: 10.1186/1471-2164-9-459.

18.

A microarray-based genotyping and genetic mapping approach for highly heterozygous outcrossing species enables localization of a large fraction of the unassembled Populus trichocarpa genome sequence.

Drost DR, Novaes E, Boaventura-Novaes C, Benedict CI, Brown RS, Yin T, Tuskan GA, Kirst M.

Plant J. 2009 Jun;58(6):1054-67. doi: 10.1111/j.1365-313X.2009.03828.x. Epub 2009 Feb 10. Erratum in: Plant J. 2009 Dec;60(5):929.

19.

Genome-wide polymorphisms and development of a microarray platform to detect genetic variations in Plasmodium yoelii.

Nair SC, Pattaradilokrat S, Zilversmit MM, Dommer J, Nagarajan V, Stephens MT, Xiao W, Tan JC, Su XZ.

Mol Biochem Parasitol. 2014 Mar-Apr;194(1-2):9-15. doi: 10.1016/j.molbiopara.2014.03.006. Epub 2014 Mar 29.

20.

Assortative mating drives linkage disequilibrium between sperm and egg recognition protein loci in the sea urchin Strongylocentrotus purpuratus.

Stapper AP, Beerli P, Levitan DR.

Mol Biol Evol. 2015 Apr;32(4):859-70. doi: 10.1093/molbev/msv010. Epub 2015 Jan 23.

PMID:
25618458

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