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Items: 1 to 20 of 91

1.

Protein fragment swapping: a method for asymmetric, selective site-directed recombination.

Zheng W, Griswold KE, Bailey-Kellogg C.

J Comput Biol. 2010 Mar;17(3):459-75. doi: 10.1089/cmb.2009.0189.

PMID:
20377457
2.

Algorithms for selecting breakpoint locations to optimize diversity in protein engineering by site-directed protein recombination.

Zheng W, Ye X, Friedman AM, Bailey-Kellogg C.

Comput Syst Bioinformatics Conf. 2007;6:31-40.

4.

Site-directed protein recombination as a shortest-path problem.

Endelman JB, Silberg JJ, Wang ZG, Arnold FH.

Protein Eng Des Sel. 2004 Jul;17(7):589-94. Epub 2004 Aug 25.

PMID:
15331774
5.

Noncontiguous SCHEMA protein recombination.

Smith MA, Arnold FH.

Methods Mol Biol. 2014;1179:345-52. doi: 10.1007/978-1-4939-1053-3_23.

PMID:
25055789
6.

Amino-acid composition after loop deletion drives domain swapping.

Nandwani N, Surana P, Udgaonkar JB, Das R, Gosavi S.

Protein Sci. 2017 Oct;26(10):1994-2002. doi: 10.1002/pro.3237. Epub 2017 Aug 30.

PMID:
28710790
7.

Improvement of stability of nitrile hydratase via protein fragment swapping.

Cui Y, Cui W, Liu Z, Zhou L, Kobayashi M, Zhou Z.

Biochem Biophys Res Commun. 2014 Jul 18;450(1):401-8. doi: 10.1016/j.bbrc.2014.05.127. Epub 2014 Jun 2.

PMID:
24944015
8.

Site-directed combinatorial construction of chimaeric genes: general method for optimizing assembly of gene fragments.

Saftalov L, Smith PA, Friedman AM, Bailey-Kellogg C.

Proteins. 2006 Aug 15;64(3):629-42.

PMID:
16783818
9.

Direct prediction of profiles of sequences compatible with a protein structure by neural networks with fragment-based local and energy-based nonlocal profiles.

Li Z, Yang Y, Faraggi E, Zhan J, Zhou Y.

Proteins. 2014 Oct;82(10):2565-73. doi: 10.1002/prot.24620. Epub 2014 Jun 19.

10.

Algorithms for optimizing cross-overs in DNA shuffling.

He L, Friedman AM, Bailey-Kellogg C.

BMC Bioinformatics. 2012 Mar 21;13 Suppl 3:S3. doi: 10.1186/1471-2105-13-S3-S3.

11.

Generation of a phagemid mouse recombinant antibody fragment library by multisite-directed mutagenesis.

Kelley LL, Momany C.

Biotechniques. 2003 Oct;35(4):750-2, 754, 756 passim.

PMID:
14579740
12.

Library analysis of SCHEMA-guided protein recombination.

Meyer MM, Silberg JJ, Voigt CA, Endelman JB, Mayo SL, Wang ZG, Arnold FH.

Protein Sci. 2003 Aug;12(8):1686-93.

13.

Optimization of combinatorial mutagenesis.

Parker AS, Griswold KE, Bailey-Kellogg C.

J Comput Biol. 2011 Nov;18(11):1743-56. doi: 10.1089/cmb.2011.0152. Epub 2011 Sep 16.

14.

Innovation by homologous recombination.

Trudeau DL, Smith MA, Arnold FH.

Curr Opin Chem Biol. 2013 Dec;17(6):902-9. doi: 10.1016/j.cbpa.2013.10.007. Epub 2013 Oct 29. Review.

PMID:
24182747
15.

General method for sequence-independent site-directed chimeragenesis.

Hiraga K, Arnold FH.

J Mol Biol. 2003 Jul 4;330(2):287-96.

PMID:
12823968
16.

Towards a ligand targeted enzyme prodrug therapy: single round panning of a beta-lactamase scaffold library on human cancer cells.

Shukla GS, Murray CJ, Estabrook M, Shen GP, Schellenberger V, Krag DN.

Int J Cancer. 2007 May 15;120(10):2233-42.

17.

Recombination of protein fragments: a promising approach toward engineering proteins with novel nanomechanical properties.

Balamurali MM, Sharma D, Chang A, Khor D, Chu R, Li H.

Protein Sci. 2008 Oct;17(10):1815-26. doi: 10.1110/ps.036376.108. Epub 2008 Jul 14.

18.

C-terminal β-strand swapping in a consensus-derived fibronectin Type III scaffold.

Teplyakov A, Obmolova G, Malia TJ, Luo J, Jacobs SA, Chan W, Domingo D, Baker A, O'Neil KT, Gilliland GL.

Proteins. 2014 Jul;82(7):1359-69. doi: 10.1002/prot.24502. Epub 2014 Feb 12.

PMID:
24375666
19.

Algorithms for joint optimization of stability and diversity in planning combinatorial libraries of chimeric proteins.

Zheng W, Friedman AM, Bailey-Kellogg C.

J Comput Biol. 2009 Aug;16(8):1151-68. doi: 10.1089/cmb.2009.0090.

PMID:
19645597
20.

Random dissection to select for protein split sites and its application in protein fragment complementation.

Chen Y, Li S, Chen T, Hua H, Lin Z.

Protein Sci. 2009 Feb;18(2):399-409. doi: 10.1002/pro.42.

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