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Items: 1 to 20 of 96

1.

LEAPdb: a database for the late embryogenesis abundant proteins.

Hunault G, Jaspard E.

BMC Genomics. 2010 Apr 1;11:221. doi: 10.1186/1471-2164-11-221.

2.

sHSPdb: a database for the analysis of small Heat Shock Proteins.

Jaspard E, Hunault G.

BMC Plant Biol. 2016 Jun 13;16(1):135. doi: 10.1186/s12870-016-0820-6.

3.

Computational and statistical analyses of amino acid usage and physico-chemical properties of the twelve late embryogenesis abundant protein classes.

Jaspard E, Macherel D, Hunault G.

PLoS One. 2012;7(5):e36968. doi: 10.1371/journal.pone.0036968. Epub 2012 May 16.

4.

The InterPro database and tools for protein domain analysis.

Mulder NJ, Apweiler R.

Curr Protoc Bioinformatics. 2008 Mar;Chapter 2:Unit 2.7. doi: 10.1002/0471250953.bi0207s21.

PMID:
18428686
5.

Identifying protein domains with the Pfam database.

Coggill P, Finn RD, Bateman A.

Curr Protoc Bioinformatics. 2008 Sep;Chapter 2:Unit 2.5. doi: 10.1002/0471250953.bi0205s23.

PMID:
18819075
6.

CKAAPs DB: a Conserved Key Amino Acid Positions DataBase.

Li WW, Reddy BV, Tate JG, Shindyalov IN, Bourne PE.

Nucleic Acids Res. 2002 Jan 1;30(1):409-11.

7.

The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases.

Côté RG, Jones P, Martens L, Kerrien S, Reisinger F, Lin Q, Leinonen R, Apweiler R, Hermjakob H.

BMC Bioinformatics. 2007 Oct 18;8:401.

8.

A Web-based classification system of DNA-binding protein families.

Karmirantzou M, Hamodrakas SJ.

Protein Eng. 2001 Jul;14(7):465-72.

9.
10.

PepBank--a database of peptides based on sequence text mining and public peptide data sources.

Shtatland T, Guettler D, Kossodo M, Pivovarov M, Weissleder R.

BMC Bioinformatics. 2007 Aug 1;8:280.

11.

3MOTIF: visualizing conserved protein sequence motifs in the protein structure database.

Bennett SP, Nevill-Manning CG, Brutlag DL.

Bioinformatics. 2003 Mar 1;19(4):541-2.

12.

A comprehensive and non-redundant database of protein domain movements.

Qi G, Lee R, Hayward S.

Bioinformatics. 2005 Jun 15;21(12):2832-8. Epub 2005 Mar 31.

13.

ProFAT: a web-based tool for the functional annotation of protein sequences.

Bradshaw CR, Surendranath V, Habermann B.

BMC Bioinformatics. 2006 Oct 23;7:466.

14.

EVEREST: a collection of evolutionary conserved protein domains.

Portugaly E, Linial N, Linial M.

Nucleic Acids Res. 2007 Jan;35(Database issue):D241-6. Epub 2006 Nov 11.

15.

PASS2: an automated database of protein alignments organised as structural superfamilies.

Bhaduri A, Pugalenthi G, Sowdhamini R.

BMC Bioinformatics. 2004 Apr 2;5:35.

16.

ProClass Protein Family Database.

Wu CH, Shivakumar S, Huang H.

Nucleic Acids Res. 1999 Jan 1;27(1):272-4.

17.

New developments in the InterPro database.

Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Buillard V, Cerutti L, Copley R, Courcelle E, Das U, Daugherty L, Dibley M, Finn R, Fleischmann W, Gough J, Haft D, Hulo N, Hunter S, Kahn D, Kanapin A, Kejariwal A, Labarga A, Langendijk-Genevaux PS, Lonsdale D, Lopez R, Letunic I, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Nikolskaya AN, Orchard S, Orengo C, Petryszak R, Selengut JD, Sigrist CJ, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C.

Nucleic Acids Res. 2007 Jan;35(Database issue):D224-8.

18.

The InterPro Database, 2003 brings increased coverage and new features.

Mulder NJ, Apweiler R, Attwood TK, Bairoch A, Barrell D, Bateman A, Binns D, Biswas M, Bradley P, Bork P, Bucher P, Copley RR, Courcelle E, Das U, Durbin R, Falquet L, Fleischmann W, Griffiths-Jones S, Haft D, Harte N, Hulo N, Kahn D, Kanapin A, Krestyaninova M, Lopez R, Letunic I, Lonsdale D, Silventoinen V, Orchard SE, Pagni M, Peyruc D, Ponting CP, Selengut JD, Servant F, Sigrist CJ, Vaughan R, Zdobnov EM.

Nucleic Acids Res. 2003 Jan 1;31(1):315-8.

19.

EyeSite: a semi-automated database of protein families in the eye.

Lee DA, Fefeu S, Edo-Ukeh AA, Orengo CA, Slingsby C.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D148-52.

20.

SMS 2.0: an updated database to study the structural plasticity of short peptide fragments in non-redundant proteins.

Ravella D, Kumar MU, Sherlin D, Shankar M, Vaishnavi MK, Sekar K.

Genomics Proteomics Bioinformatics. 2012 Feb;10(1):44-50. doi: 10.1016/S1672-0229(11)60032-6.

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