Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 126

1.

Automatic vs. manual curation of a multi-source chemical dictionary: the impact on text mining.

Hettne KM, Williams AJ, van Mulligen EM, Kleinjans J, Tkachenko V, Kors JA.

J Cheminform. 2010 Mar 23;2(1):3. doi: 10.1186/1758-2946-2-3.

2.

A dictionary to identify small molecules and drugs in free text.

Hettne KM, Stierum RH, Schuemie MJ, Hendriksen PJ, Schijvenaars BJ, Mulligen EM, Kleinjans J, Kors JA.

Bioinformatics. 2009 Nov 15;25(22):2983-91. doi: 10.1093/bioinformatics/btp535. Epub 2009 Sep 16.

PMID:
19759196
3.

Gene name identification and normalization using a model organism database.

Morgan AA, Hirschman L, Colosimo M, Yeh AS, Colombe JB.

J Biomed Inform. 2004 Dec;37(6):396-410.

4.

Evaluation of techniques for increasing recall in a dictionary approach to gene and protein name identification.

Schuemie MJ, Mons B, Weeber M, Kors JA.

J Biomed Inform. 2007 Jun;40(3):316-24. Epub 2006 Sep 24.

5.

Automatic vs. manual curation of a multi-source chemical dictionary: the impact on text mining.

Hettne KM, Williams AJ, van Mulligen EM, Kleinjans J, Tkachenko V, Kors JA.

J Cheminform. 2010 Jun 3;2(1):4. doi: 10.1186/1758-2946-2-4. No abstract available.

6.

Integrating various resources for gene name normalization.

Hu Y, Li Y, Lin H, Yang Z, Cheng L.

PLoS One. 2012;7(9):e43558. doi: 10.1371/journal.pone.0043558. Epub 2012 Sep 12.

7.

Semi-automated curation of protein subcellular localization: a text mining-based approach to Gene Ontology (GO) Cellular Component curation.

Van Auken K, Jaffery J, Chan J, Müller HM, Sternberg PW.

BMC Bioinformatics. 2009 Jul 21;10:228. doi: 10.1186/1471-2105-10-228.

8.

Terminologies for text-mining; an experiment in the lipoprotein metabolism domain.

Alexopoulou D, Wächter T, Pickersgill L, Eyre C, Schroeder M.

BMC Bioinformatics. 2008 Apr 25;9 Suppl 4:S2. doi: 10.1186/1471-2105-9-S4-S2.

9.

Automated extraction and semantic analysis of mutation impacts from the biomedical literature.

Naderi N, Witte R.

BMC Genomics. 2012 Jun 18;13 Suppl 4:S10. doi: 10.1186/1471-2164-13-S4-S10.

10.
11.

Protein names precisely peeled off free text.

Mika S, Rost B.

Bioinformatics. 2004 Aug 4;20 Suppl 1:i241-7.

PMID:
15262805
12.

Text mining and manual curation of chemical-gene-disease networks for the comparative toxicogenomics database (CTD).

Wiegers TC, Davis AP, Cohen KB, Hirschman L, Mattingly CJ.

BMC Bioinformatics. 2009 Oct 8;10:326. doi: 10.1186/1471-2105-10-326.

13.

Automated curation of gene name normalization results using the Konstanz information miner.

Zwick M.

J Biomed Inform. 2015 Feb;53:58-64. doi: 10.1016/j.jbi.2014.08.016. Epub 2014 Sep 10.

14.

MDB: a database system utilizing automatic construction of modules and STAR-derived universal language.

Migliavacca E, Adzhubei AA, Peitsch MC.

Bioinformatics. 2001 Nov;17(11):1047-52.

PMID:
11724733
15.

Automatic rule generation for protein annotation with the C4.5 data mining algorithm applied on SWISS-PROT.

Kretschmann E, Fleischmann W, Apweiler R.

Bioinformatics. 2001 Oct;17(10):920-6.

PMID:
11673236
16.

Improving the performance of dictionary-based approaches in protein name recognition.

Tsuruoka Y, Tsujii J.

J Biomed Inform. 2004 Dec;37(6):461-70.

17.

Using an ensemble system to improve concept extraction from clinical records.

Kang N, Afzal Z, Singh B, van Mulligen EM, Kors JA.

J Biomed Inform. 2012 Jun;45(3):423-8. doi: 10.1016/j.jbi.2011.12.009. Epub 2012 Jan 3.

18.

Ambiguity and variability of database and software names in bioinformatics.

Duck G, Kovacevic A, Robertson DL, Stevens R, Nenadic G.

J Biomed Semantics. 2015 Jun 29;6:29. doi: 10.1186/s13326-015-0026-0. eCollection 2015.

19.

The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text.

Pafilis E, Frankild SP, Fanini L, Faulwetter S, Pavloudi C, Vasileiadou A, Arvanitidis C, Jensen LJ.

PLoS One. 2013 Jun 18;8(6):e65390. doi: 10.1371/journal.pone.0065390. Print 2013.

20.

Recognizing names in biomedical texts: a machine learning approach.

Zhou G, Zhang J, Su J, Shen D, Tan C.

Bioinformatics. 2004 May 1;20(7):1178-90. Epub 2004 Feb 10.

PMID:
14871877

Supplemental Content

Support Center