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Items: 1 to 20 of 116

1.

Single feature polymorphism (SFP)-based selective sweep identification and association mapping of growth-related metabolic traits in Arabidopsis thaliana.

Childs LH, Witucka-Wall H, Günther T, Sulpice R, Korff MV, Stitt M, Walther D, Schmid KJ, Altmann T.

BMC Genomics. 2010 Mar 20;11:188. doi: 10.1186/1471-2164-11-188.

2.

Association mapping of cadmium, copper and hydrogen peroxide tolerance of roots and translocation capacities of cadmium and copper in Arabidopsis thaliana.

Tazib T, Kobayashi Y, Ikka T, Zhao CR, Iuchi S, Kobayashi M, Kimura K, Koyama H.

Physiol Plant. 2009 Nov;137(3):235-48. doi: 10.1111/j.1399-3054.2009.01286.x.

PMID:
19832939
4.

Genome-wide mapping with biallelic markers in Arabidopsis thaliana.

Cho RJ, Mindrinos M, Richards DR, Sapolsky RJ, Anderson M, Drenkard E, Dewdney J, Reuber TL, Stammers M, Federspiel N, Theologis A, Yang WH, Hubbell E, Au M, Chung EY, Lashkari D, Lemieux B, Dean C, Lipshutz RJ, Ausubel FM, Davis RW, Oefner PJ.

Nat Genet. 1999 Oct;23(2):203-7.

PMID:
10508518
5.

A simple optimization can improve the performance of single feature polymorphism detection by Affymetrix expression arrays.

Horiuchi Y, Harushima Y, Fujisawa H, Mochizuki T, Kawakita M, Sakaguchi T, Kurata N.

BMC Genomics. 2010 May 20;11:315. doi: 10.1186/1471-2164-11-315.

6.

Understanding the evolution of defense metabolites in Arabidopsis thaliana using genome-wide association mapping.

Chan EK, Rowe HC, Kliebenstein DJ.

Genetics. 2010 Jul;185(3):991-1007. doi: 10.1534/genetics.109.108522. Epub 2009 Sep 7.

7.

Identification of EMS-induced causal mutations in a non-reference Arabidopsis thaliana accession by whole genome sequencing.

Uchida N, Sakamoto T, Kurata T, Tasaka M.

Plant Cell Physiol. 2011 Apr;52(4):716-22. doi: 10.1093/pcp/pcr029. Epub 2011 Mar 11.

PMID:
21398646
8.

Large-scale identification and analysis of genome-wide single-nucleotide polymorphisms for mapping in Arabidopsis thaliana.

Schmid KJ, Sorensen TR, Stracke R, Torjek O, Altmann T, Mitchell-Olds T, Weisshaar B.

Genome Res. 2003 Jun;13(6A):1250-7.

9.

Common sequence polymorphisms shaping genetic diversity in Arabidopsis thaliana.

Clark RM, Schweikert G, Toomajian C, Ossowski S, Zeller G, Shinn P, Warthmann N, Hu TT, Fu G, Hinds DA, Chen H, Frazer KA, Huson DH, Schölkopf B, Nordborg M, Rätsch G, Ecker JR, Weigel D.

Science. 2007 Jul 20;317(5836):338-42.

10.

Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana.

Theologis A, Ecker JR, Palm CJ, Federspiel NA, Kaul S, White O, Alonso J, Altafi H, Araujo R, Bowman CL, Brooks SY, Buehler E, Chan A, Chao Q, Chen H, Cheuk RF, Chin CW, Chung MK, Conn L, Conway AB, Conway AR, Creasy TH, Dewar K, Dunn P, Etgu P, Feldblyum TV, Feng J, Fong B, Fujii CY, Gill JE, Goldsmith AD, Haas B, Hansen NF, Hughes B, Huizar L, Hunter JL, Jenkins J, Johnson-Hopson C, Khan S, Khaykin E, Kim CJ, Koo HL, Kremenetskaia I, Kurtz DB, Kwan A, Lam B, Langin-Hooper S, Lee A, Lee JM, Lenz CA, Li JH, Li Y, Lin X, Liu SX, Liu ZA, Luros JS, Maiti R, Marziali A, Militscher J, Miranda M, Nguyen M, Nierman WC, Osborne BI, Pai G, Peterson J, Pham PK, Rizzo M, Rooney T, Rowley D, Sakano H, Salzberg SL, Schwartz JR, Shinn P, Southwick AM, Sun H, Tallon LJ, Tambunga G, Toriumi MJ, Town CD, Utterback T, Van Aken S, Vaysberg M, Vysotskaia VS, Walker M, Wu D, Yu G, Fraser CM, Venter JC, Davis RW.

Nature. 2000 Dec 14;408(6814):816-20.

PMID:
11130712
11.

Genotyping and mapping with high-density oligonucleotide arrays.

Borevitz J.

Methods Mol Biol. 2006;323:137-45.

PMID:
16739574
12.

Mapping quantitative trait loci associated with selenate tolerance in Arabidopsis thaliana.

Zhang L, Byrne PF, Pilon-Smits EA.

New Phytol. 2006;170(1):33-42.

13.

A high-density transcript linkage map with 1,845 expressed genes positioned by microarray-based Single Feature Polymorphisms (SFP) in Eucalyptus.

Neves LG, Mc Mamani E, Alfenas AC, Kirst M, Grattapaglia D.

BMC Genomics. 2011 Apr 14;12:189. doi: 10.1186/1471-2164-12-189.

14.

Evidence for a large-scale population structure of Arabidopsis thaliana from genome-wide single nucleotide polymorphism markers.

Schmid KJ, Törjék O, Meyer R, Schmuths H, Hoffmann MH, Altmann T.

Theor Appl Genet. 2006 Apr;112(6):1104-14. Epub 2006 Feb 2.

PMID:
16453134
15.

Genome-wide patterns of single-feature polymorphism in Arabidopsis thaliana.

Borevitz JO, Hazen SP, Michael TP, Morris GP, Baxter IR, Hu TT, Chen H, Werner JD, Nordborg M, Salt DE, Kay SA, Chory J, Weigel D, Jones JD, Ecker JR.

Proc Natl Acad Sci U S A. 2007 Jul 17;104(29):12057-62. Epub 2007 Jul 12.

16.

Exploring genetic and expression differences between physiologically extreme ecotypes: comparative genomic hybridization and gene expression studies of Kas-1 and Tsu-1 accessions of Arabidopsis thaliana.

Juenger TE, Sen S, Bray E, Stahl E, Wayne T, McKay J, Richards JH.

Plant Cell Environ. 2010 Aug 1;33(8):1268-84. doi: 10.1111/j.1365-3040.2010.02146.x. Epub 2010 Mar 18.

17.

Global analysis of genetic, epigenetic and transcriptional polymorphisms in Arabidopsis thaliana using whole genome tiling arrays.

Zhang X, Shiu SH, Cal A, Borevitz JO.

PLoS Genet. 2008 Mar 21;4(3):e1000032. doi: 10.1371/journal.pgen.1000032. Erratum in: PLoS Genet. 2008 Jun;4(6). doi: 10.1371/annotation/e21d3565-fec6-44d9-8fab-83da49c7c0b8. Shiu, Shinhan [corrected to Shiu, Shin-Han].

18.

Genome-wide patterns of genetic variation in worldwide Arabidopsis thaliana accessions from the RegMap panel.

Horton MW, Hancock AM, Huang YS, Toomajian C, Atwell S, Auton A, Muliyati NW, Platt A, Sperone FG, Vilhjálmsson BJ, Nordborg M, Borevitz JO, Bergelson J.

Nat Genet. 2012 Jan 8;44(2):212-6. doi: 10.1038/ng.1042.

19.
20.

Recombination and linkage disequilibrium in Arabidopsis thaliana.

Kim S, Plagnol V, Hu TT, Toomajian C, Clark RM, Ossowski S, Ecker JR, Weigel D, Nordborg M.

Nat Genet. 2007 Sep;39(9):1151-5. Epub 2007 Aug 5.

PMID:
17676040

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