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Items: 1 to 20 of 89

1.

Whole genome evaluation of horizontal transfers in the pathogenic fungus Aspergillus fumigatus.

Mallet LV, Becq J, Deschavanne P.

BMC Genomics. 2010 Mar 12;11:171. doi: 10.1186/1471-2164-11-171.

2.

Detection and characterization of horizontal transfers in prokaryotes using genomic signature.

Dufraigne C, Fertil B, Lespinats S, Giron A, Deschavanne P.

Nucleic Acids Res. 2005 Jan 13;33(1):e6.

3.

Horizontal transfer and evolution of prokaryote transposable elements in eukaryotes.

Gilbert C, Cordaux R.

Genome Biol Evol. 2013;5(5):822-32. doi: 10.1093/gbe/evt057.

4.

Genomic islands in the pathogenic filamentous fungus Aspergillus fumigatus.

Fedorova ND, Khaldi N, Joardar VS, Maiti R, Amedeo P, Anderson MJ, Crabtree J, Silva JC, Badger JH, Albarraq A, Angiuoli S, Bussey H, Bowyer P, Cotty PJ, Dyer PS, Egan A, Galens K, Fraser-Liggett CM, Haas BJ, Inman JM, Kent R, Lemieux S, Malavazi I, Orvis J, Roemer T, Ronning CM, Sundaram JP, Sutton G, Turner G, Venter JC, White OR, Whitty BR, Youngman P, Wolfe KH, Goldman GH, Wortman JR, Jiang B, Denning DW, Nierman WC.

PLoS Genet. 2008 Apr 11;4(4):e1000046. doi: 10.1371/journal.pgen.1000046.

5.

Sequencing of mitochondrial genomes of nine Aspergillus and Penicillium species identifies mobile introns and accessory genes as main sources of genome size variability.

Joardar V, Abrams NF, Hostetler J, Paukstelis PJ, Pakala S, Pakala SB, Zafar N, Abolude OO, Payne G, Andrianopoulos A, Denning DW, Nierman WC.

BMC Genomics. 2012 Dec 12;13:698. doi: 10.1186/1471-2164-13-698.

6.

Genomic sequence of the pathogenic and allergenic filamentous fungus Aspergillus fumigatus.

Nierman WC, Pain A, Anderson MJ, Wortman JR, Kim HS, Arroyo J, Berriman M, Abe K, Archer DB, Bermejo C, Bennett J, Bowyer P, Chen D, Collins M, Coulsen R, Davies R, Dyer PS, Farman M, Fedorova N, Fedorova N, Feldblyum TV, Fischer R, Fosker N, Fraser A, García JL, García MJ, Goble A, Goldman GH, Gomi K, Griffith-Jones S, Gwilliam R, Haas B, Haas H, Harris D, Horiuchi H, Huang J, Humphray S, Jiménez J, Keller N, Khouri H, Kitamoto K, Kobayashi T, Konzack S, Kulkarni R, Kumagai T, Lafon A, Latgé JP, Li W, Lord A, Lu C, Majoros WH, May GS, Miller BL, Mohamoud Y, Molina M, Monod M, Mouyna I, Mulligan S, Murphy L, O'Neil S, Paulsen I, Peñalva MA, Pertea M, Price C, Pritchard BL, Quail MA, Rabbinowitsch E, Rawlins N, Rajandream MA, Reichard U, Renauld H, Robson GD, Rodriguez de Córdoba S, Rodríguez-Peña JM, Ronning CM, Rutter S, Salzberg SL, Sanchez M, Sánchez-Ferrero JC, Saunders D, Seeger K, Squares R, Squares S, Takeuchi M, Tekaia F, Turner G, Vazquez de Aldana CR, Weidman J, White O, Woodward J, Yu JH, Fraser C, Galagan JE, Asai K, Machida M, Hall N, Barrell B, Denning DW.

Nature. 2005 Dec 22;438(7071):1151-6. Erratum in: Nature. 2006 Jan 26;439(7075):502. Lafton, Anne [corrected to Lafon, Anne].

PMID:
16372009
7.

HGT-Finder: A New Tool for Horizontal Gene Transfer Finding and Application to Aspergillus genomes.

Nguyen M, Ekstrom A, Li X, Yin Y.

Toxins (Basel). 2015 Oct 9;7(10):4035-53. doi: 10.3390/toxins7104035.

8.

Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88.

Andersen MR, Salazar MP, Schaap PJ, van de Vondervoort PJ, Culley D, Thykaer J, Frisvad JC, Nielsen KF, Albang R, Albermann K, Berka RM, Braus GH, Braus-Stromeyer SA, Corrochano LM, Dai Z, van Dijck PW, Hofmann G, Lasure LL, Magnuson JK, Menke H, Meijer M, Meijer SL, Nielsen JB, Nielsen ML, van Ooyen AJ, Pel HJ, Poulsen L, Samson RA, Stam H, Tsang A, van den Brink JM, Atkins A, Aerts A, Shapiro H, Pangilinan J, Salamov A, Lou Y, Lindquist E, Lucas S, Grimwood J, Grigoriev IV, Kubicek CP, Martinez D, van Peij NN, Roubos JA, Nielsen J, Baker SE.

Genome Res. 2011 Jun;21(6):885-97. doi: 10.1101/gr.112169.110. Epub 2011 May 4.

9.

A new database (GCD) on genome composition for eukaryote and prokaryote genome sequences and their initial analyses.

Kryukov K, Sumiyama K, Ikeo K, Gojobori T, Saitou N.

Genome Biol Evol. 2012;4(4):501-12. doi: 10.1093/gbe/evs026. Epub 2012 Mar 14.

10.

[LTR retrotransposons from genomes of Aspergillus fumigatus and A. nidulans].

Novikova OS, Fet V, Blinov AG.

Mol Biol (Mosk). 2007 Sep-Oct;41(5):830-8. Russian.

PMID:
18240565
11.

Genome sequence comparison of Aspergillus fumigatus strains isolated from patients with pulmonary aspergilloma and chronic necrotizing pulmonary aspergillosis.

Takahashi-Nakaguchi A, Muraosa Y, Hagiwara D, Sakai K, Toyotome T, Watanabe A, Kawamoto S, Kamei K, Gonoi T, Takahashi H.

Med Mycol. 2015 May;53(4):353-60. doi: 10.1093/mmy/myv003.

PMID:
25851262
12.

Genomics of the fungal kingdom: insights into eukaryotic biology.

Galagan JE, Henn MR, Ma LJ, Cuomo CA, Birren B.

Genome Res. 2005 Dec;15(12):1620-31. Review. Erratum in: Genome Res. 2006 Feb;16(2):304.

13.

Multilocus sequence typing of the pathogenic fungus Aspergillus fumigatus.

Bain JM, Tavanti A, Davidson AD, Jacobsen MD, Shaw D, Gow NA, Odds FC.

J Clin Microbiol. 2007 May;45(5):1469-77. Epub 2007 Mar 21.

14.

Horizontal gene transfer and nucleotide compositional anomaly in large DNA viruses.

Monier A, Claverie JM, Ogata H.

BMC Genomics. 2007 Dec 10;8:456.

15.

Using homolog groups to create a whole-genomic tree of free-living organisms: an update.

House CH, Fitz-Gibbon ST.

J Mol Evol. 2002 Apr;54(4):539-47.

PMID:
11956692
16.

Insight into the genome of Aspergillus fumigatus: analysis of a 922 kb region encompassing the nitrate assimilation gene cluster.

Pain A, Woodward J, Quail MA, Anderson MJ, Clark R, Collins M, Fosker N, Fraser A, Harris D, Larke N, Murphy L, Humphray S, O'Neil S, Pertea M, Price C, Rabbinowitsch E, Rajandream MA, Salzberg S, Saunders D, Seeger K, Sharp S, Warren T, Denning DW, Barrell B, Hall N.

Fungal Genet Biol. 2004 Apr;41(4):443-53.

PMID:
14998527
17.

Potential use of host-derived genome signatures to root virus phylogenies.

Simmons MP.

Mol Phylogenet Evol. 2008 Dec;49(3):969-78. doi: 10.1016/j.ympev.2008.08.014. Epub 2008 Aug 29.

PMID:
18793737
18.

CADRE: the Central Aspergillus Data REpository.

Mabey JE, Anderson MJ, Giles PF, Miller CJ, Attwood TK, Paton NW, Bornberg-Bauer E, Robson GD, Oliver SG, Denning DW.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D401-5.

19.

Widespread horizontal gene transfer from circular single-stranded DNA viruses to eukaryotic genomes.

Liu H, Fu Y, Li B, Yu X, Xie J, Cheng J, Ghabrial SA, Li G, Yi X, Jiang D.

BMC Evol Biol. 2011 Sep 26;11:276. doi: 10.1186/1471-2148-11-276.

20.

Evolution of gene fusions: horizontal transfer versus independent events.

Yanai I, Wolf YI, Koonin EV.

Genome Biol. 2002;3(5):research0024. Epub 2002 Apr 26.

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