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Items: 1 to 20 of 102

1.

Development and analysis of a germline BAC resource for the sea lamprey, a vertebrate that undergoes substantial chromatin diminution.

Smith JJ, Stuart AB, Sauka-Spengler T, Clifton SW, Amemiya CT.

Chromosoma. 2010 Aug;119(4):381-9. doi: 10.1007/s00412-010-0263-z. Epub 2010 Mar 2.

2.

Cellular and Molecular Features of Developmentally Programmed Genome Rearrangement in a Vertebrate (Sea Lamprey: Petromyzon marinus).

Timoshevskiy VA, Herdy JR, Keinath MC, Smith JJ.

PLoS Genet. 2016 Jun 24;12(6):e1006103. doi: 10.1371/journal.pgen.1006103. eCollection 2016 Jun.

3.

Cytogenetic evidences of genome rearrangement and differential epigenetic chromatin modification in the sea lamprey (Petromyzon marinus).

Covelo-Soto L, Morán P, Pasantes JJ, Pérez-García C.

Genetica. 2014 Dec;142(6):545-54. doi: 10.1007/s10709-014-9802-5. Epub 2014 Nov 29.

PMID:
25432678
4.

Sequencing of the sea lamprey (Petromyzon marinus) genome provides insights into vertebrate evolution.

Smith JJ, Kuraku S, Holt C, Sauka-Spengler T, Jiang N, Campbell MS, Yandell MD, Manousaki T, Meyer A, Bloom OE, Morgan JR, Buxbaum JD, Sachidanandam R, Sims C, Garruss AS, Cook M, Krumlauf R, Wiedemann LM, Sower SA, Decatur WA, Hall JA, Amemiya CT, Saha NR, Buckley KM, Rast JP, Das S, Hirano M, McCurley N, Guo P, Rohner N, Tabin CJ, Piccinelli P, Elgar G, Ruffier M, Aken BL, Searle SM, Muffato M, Pignatelli M, Herrero J, Jones M, Brown CT, Chung-Davidson YW, Nanlohy KG, Libants SV, Yeh CY, McCauley DW, Langeland JA, Pancer Z, Fritzsch B, de Jong PJ, Zhu B, Fulton LL, Theising B, Flicek P, Bronner ME, Warren WC, Clifton SW, Wilson RK, Li W.

Nat Genet. 2013 Apr;45(4):415-21, 421e1-2. doi: 10.1038/ng.2568. Epub 2013 Feb 24.

5.

Programmed loss of millions of base pairs from a vertebrate genome.

Smith JJ, Antonacci F, Eichler EE, Amemiya CT.

Proc Natl Acad Sci U S A. 2009 Jul 7;106(27):11212-7. doi: 10.1073/pnas.0902358106. Epub 2009 Jun 26.

6.

Genetic consequences of programmed genome rearrangement.

Smith JJ, Baker C, Eichler EE, Amemiya CT.

Curr Biol. 2012 Aug 21;22(16):1524-9. doi: 10.1016/j.cub.2012.06.028. Epub 2012 Jul 19.

7.

Characterization of Somatically-Eliminated Genes During Development of the Sea Lamprey (Petromyzon marinus).

Bryant SA, Herdy JR, Amemiya CT, Smith JJ.

Mol Biol Evol. 2016 Sep;33(9):2337-44. doi: 10.1093/molbev/msw104. Epub 2016 Jun 10.

PMID:
27288344
8.

Construction of a nurse shark (Ginglymostoma cirratum) bacterial artificial chromosome (BAC) library and a preliminary genome survey.

Luo M, Kim H, Kudrna D, Sisneros NB, Lee SJ, Mueller C, Collura K, Zuccolo A, Buckingham EB, Grim SM, Yanagiya K, Inoko H, Shiina T, Flajnik MF, Wing RA, Ohta Y.

BMC Genomics. 2006 May 3;7:106.

9.

The sea lamprey meiotic map improves resolution of ancient vertebrate genome duplications.

Smith JJ, Keinath MC.

Genome Res. 2015 Aug;25(8):1081-90. doi: 10.1101/gr.184135.114. Epub 2015 Jun 5.

10.

Organization of lamprey variable lymphocyte receptor C locus and repertoire development.

Das S, Hirano M, Aghaallaei N, Bajoghli B, Boehm T, Cooper MD.

Proc Natl Acad Sci U S A. 2013 Apr 9;110(15):6043-8. doi: 10.1073/pnas.1302500110. Epub 2013 Mar 4.

11.

DNA methylation in a sea lamprey vasotocin receptor gene promoter correlates with tissue- and life-stage-specific mRNA expression.

Mayasich SA, Bemis LT, Clarke BL.

Comp Biochem Physiol B Biochem Mol Biol. 2016 Dec;202:56-66. doi: 10.1016/j.cbpb.2016.07.007. Epub 2016 Aug 4.

PMID:
27497665
12.

A BAC library of the SP80-3280 sugarcane variety (saccharum sp.) and its inferred microsynteny with the sorghum genome.

Figueira TR, Okura V, Rodrigues da Silva F, Jose da Silva M, Kudrna D, Ammiraju JS, Talag J, Wing R, Arruda P.

BMC Res Notes. 2012 Apr 23;5:185. doi: 10.1186/1756-0500-5-185.

13.

Lamins of the sea lamprey (Petromyzon marinus) and the evolution of the vertebrate lamin protein family.

Schilf P, Peter A, Hurek T, Stick R.

Eur J Cell Biol. 2014 Jul;93(7):308-21. doi: 10.1016/j.ejcb.2014.06.004. Epub 2014 Jul 5.

PMID:
25059907
14.

The sea lamprey Petromyzon marinus genome reveals the early origin of several chemosensory receptor families in the vertebrate lineage.

Libants S, Carr K, Wu H, Teeter JH, Chung-Davidson YW, Zhang Z, Wilkerson C, Li W.

BMC Evol Biol. 2009 Jul 31;9:180. doi: 10.1186/1471-2148-9-180.

15.

Billions of basepairs of recently expanded, repetitive sequences are eliminated from the somatic genome during copepod development.

Sun C, Wyngaard G, Walton DB, Wichman HA, Mueller RL.

BMC Genomics. 2014 Mar 11;15:186. doi: 10.1186/1471-2164-15-186.

16.

Complete genome sequence of the mitochondrial DNA of the river lamprey, Lethenteron japonicum.

Kawai YL, Yura K, Shindo M, Kusakabe R, Hayashi K, Hata K, Nakabayashi K, Okamura K.

Mitochondrial DNA. 2015;26(6):863-4. doi: 10.3109/19401736.2013.861432. Epub 2014 Jan 10.

PMID:
24409927
17.

BAC library construction and BAC end sequencing of five Drosophila species: the comparative map with the D. melanogaster genome.

Murakami K, Toyoda A, Hattori M, Kuroki Y, Fujiyama A, Kojima T, Matsuda M, Sakaki Y, Yamamoto MT.

Genes Genet Syst. 2008 Jun;83(3):245-56.

18.

Integrated and sequence-ordered BAC- and YAC-based physical maps for the rat genome.

Krzywinski M, Wallis J, Gösele C, Bosdet I, Chiu R, Graves T, Hummel O, Layman D, Mathewson C, Wye N, Zhu B, Albracht D, Asano J, Barber S, Brown-John M, Chan S, Chand S, Cloutier A, Davito J, Fjell C, Gaige T, Ganten D, Girn N, Guggenheimer K, Himmelbauer H, Kreitler T, Leach S, Lee D, Lehrach H, Mayo M, Mead K, Olson T, Pandoh P, Prabhu AL, Shin H, Tänzer S, Thompson J, Tsai M, Walker J, Yang G, Sekhon M, Hillier L, Zimdahl H, Marziali A, Osoegawa K, Zhao S, Siddiqui A, de Jong PJ, Warren W, Mardis E, McPherson JD, Wilson R, Hübner N, Jones S, Marra M, Schein J.

Genome Res. 2004 Apr;14(4):766-79.

19.

A BAC-based physical map of the Hessian fly genome anchored to polytene chromosomes.

Aggarwal R, Benatti TR, Gill N, Zhao C, Chen MS, Fellers JP, Schemerhorn BJ, Stuart JJ.

BMC Genomics. 2009 Jul 2;10:293. doi: 10.1186/1471-2164-10-293.

20.

The emergence of the vasopressin and oxytocin hormone receptor gene family lineage: Clues from the characterization of vasotocin receptors in the sea lamprey (Petromyzon marinus).

Mayasich SA, Clarke BL.

Gen Comp Endocrinol. 2016 Jan 15;226:88-101. doi: 10.1016/j.ygcen.2016.01.001. Epub 2016 Jan 4.

PMID:
26764211

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