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Abundant ribonucleotide incorporation into DNA by yeast replicative polymerases.

Nick McElhinny SA, Watts BE, Kumar D, Watt DL, Lundström EB, Burgers PM, Johansson E, Chabes A, Kunkel TA.

Proc Natl Acad Sci U S A. 2010 Mar 16;107(11):4949-54. doi: 10.1073/pnas.0914857107.


Ribonucleotide incorporation by yeast DNA polymerase ζ.

Makarova AV, Nick McElhinny SA, Watts BE, Kunkel TA, Burgers PM.

DNA Repair (Amst). 2014 Jun;18:63-7. doi: 10.1016/j.dnarep.2014.02.017.


Ribonucleotide incorporation, proofreading and bypass by human DNA polymerase δ.

Clausen AR, Zhang S, Burgers PM, Lee MY, Kunkel TA.

DNA Repair (Amst). 2013 Feb 1;12(2):121-7. doi: 10.1016/j.dnarep.2012.11.006.


Genome instability due to ribonucleotide incorporation into DNA.

Nick McElhinny SA, Kumar D, Clark AB, Watt DL, Watts BE, Lundström EB, Johansson E, Chabes A, Kunkel TA.

Nat Chem Biol. 2010 Oct;6(10):774-81. doi: 10.1038/nchembio.424.


Replication of ribonucleotide-containing DNA templates by yeast replicative polymerases.

Watt DL, Johansson E, Burgers PM, Kunkel TA.

DNA Repair (Amst). 2011 Aug 15;10(8):897-902. doi: 10.1016/j.dnarep.2011.05.009.


Mismatch repair-independent tandem repeat sequence instability resulting from ribonucleotide incorporation by DNA polymerase ε.

Clark AB, Lujan SA, Kissling GE, Kunkel TA.

DNA Repair (Amst). 2011 May 5;10(5):476-82. doi: 10.1016/j.dnarep.2011.02.001.


Cost of rNTP/dNTP pool imbalance at the replication fork.

Yao NY, Schroeder JW, Yurieva O, Simmons LA, O'Donnell ME.

Proc Natl Acad Sci U S A. 2013 Aug 6;110(32):12942-7. doi: 10.1073/pnas.1309506110.


Pre-steady state kinetic analysis of HIV-1 reverse transcriptase for non-canonical ribonucleoside triphosphate incorporation and DNA synthesis from ribonucleoside-containing DNA template.

Nguyen LA, Domaoal RA, Kennedy EM, Kim DH, Schinazi RF, Kim B.

Antiviral Res. 2015 Mar;115:75-82. doi: 10.1016/j.antiviral.2014.12.016.


The steric gate of DNA polymerase ι regulates ribonucleotide incorporation and deoxyribonucleotide fidelity.

Donigan KA, McLenigan MP, Yang W, Goodman MF, Woodgate R.

J Biol Chem. 2014 Mar 28;289(13):9136-45. doi: 10.1074/jbc.M113.545442.


Human DNA polymerase ε is able to efficiently extend from multiple consecutive ribonucleotides.

Göksenin AY, Zahurancik W, LeCompte KG, Taggart DJ, Suo Z, Pursell ZF.

J Biol Chem. 2012 Dec 14;287(51):42675-84. doi: 10.1074/jbc.M112.422733.


Balancing eukaryotic replication asymmetry with replication fidelity.

Kunkel TA.

Curr Opin Chem Biol. 2011 Oct;15(5):620-6. doi: 10.1016/j.cbpa.2011.07.025. Review.


Evidence from mutational specificity studies that yeast DNA polymerases delta and epsilon replicate different DNA strands at an intracellular replication fork.

Karthikeyan R, Vonarx EJ, Straffon AF, Simon M, Faye G, Kunz BA.

J Mol Biol. 2000 Jun 2;299(2):405-19.


Frequent incorporation of ribonucleotides during HIV-1 reverse transcription and their attenuated repair in macrophages.

Kennedy EM, Amie SM, Bambara RA, Kim B.

J Biol Chem. 2012 Apr 20;287(17):14280-8. doi: 10.1074/jbc.M112.348482.


Tracking replication enzymology in vivo by genome-wide mapping of ribonucleotide incorporation.

Clausen AR, Lujan SA, Burkholder AB, Orebaugh CD, Williams JS, Clausen MF, Malc EP, Mieczkowski PA, Fargo DC, Smith DJ, Kunkel TA.

Nat Struct Mol Biol. 2015 Mar;22(3):185-91. doi: 10.1038/nsmb.2957.


Biochemical properties of Saccharomyces cerevisiae DNA polymerase IV.

Bebenek K, Garcia-Diaz M, Patishall SR, Kunkel TA.

J Biol Chem. 2005 May 20;280(20):20051-8.


Ribonucleotide discrimination and reverse transcription by the human mitochondrial DNA polymerase.

Kasiviswanathan R, Copeland WC.

J Biol Chem. 2011 Sep 9;286(36):31490-500. doi: 10.1074/jbc.M111.252460.


Genetic Networks Required to Coordinate Chromosome Replication by DNA Polymerases α, δ, and ε in Saccharomyces cerevisiae.

Dubarry M, Lawless C, Banks AP, Cockell S, Lydall D.

G3 (Bethesda). 2015 Aug 21;5(10):2187-97. doi: 10.1534/g3.115.021493.


Evidence that processing of ribonucleotides in DNA by topoisomerase 1 is leading-strand specific.

Williams JS, Clausen AR, Lujan SA, Marjavaara L, Clark AB, Burgers PM, Chabes A, Kunkel TA.

Nat Struct Mol Biol. 2015 Apr;22(4):291-7. doi: 10.1038/nsmb.2989.


Unlocking the steric gate of DNA polymerase η leads to increased genomic instability in Saccharomyces cerevisiae.

Donigan KA, Cerritelli SM, McDonald JP, Vaisman A, Crouch RJ, Woodgate R.

DNA Repair (Amst). 2015 Nov;35:1-12. doi: 10.1016/j.dnarep.2015.07.002.

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