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Items: 1 to 20 of 98

1.

Into the unknown: expression profiling without genome sequence information in CHO by next generation sequencing.

Birzele F, Schaub J, Rust W, Clemens C, Baum P, Kaufmann H, Weith A, Schulz TW, Hildebrandt T.

Nucleic Acids Res. 2010 Jul;38(12):3999-4010. doi: 10.1093/nar/gkq116. Epub 2010 Mar 1.

2.

Towards next generation CHO cell biology: Bioinformatics methods for RNA-Seq-based expression profiling.

Monger C, Kelly PS, Gallagher C, Clynes M, Barron N, Clarke C.

Biotechnol J. 2015 Jul;10(7):950-66. doi: 10.1002/biot.201500107. Epub 2015 Jun 9. Review.

PMID:
26058739
3.

Genomic and proteomic exploration of CHO and hybridoma cells under sodium butyrate treatment.

Yee JC, de Leon Gatti M, Philp RJ, Yap M, Hu WS.

Biotechnol Bioeng. 2008 Apr 1;99(5):1186-204.

PMID:
17929327
4.

Comparative transcriptional analysis of mouse hybridoma and recombinant Chinese hamster ovary cells undergoing butyrate treatment.

De Leon Gatti M, Wlaschin KF, Nissom PM, Yap M, Hu WS.

J Biosci Bioeng. 2007 Jan;103(1):82-91.

PMID:
17298905
5.

Next-generation sequencing of the Chinese hamster ovary microRNA transcriptome: Identification, annotation and profiling of microRNAs as targets for cellular engineering.

Hackl M, Jakobi T, Blom J, Doppmeier D, Brinkrolf K, Szczepanowski R, Bernhart SH, Höner Zu Siederdissen C, Bort JA, Wieser M, Kunert R, Jeffs S, Hofacker IL, Goesmann A, Pühler A, Borth N, Grillari J.

J Biotechnol. 2011 Apr 20;153(1-2):62-75. doi: 10.1016/j.jbiotec.2011.02.011. Epub 2011 Mar 30.

6.

Transcriptome analysis of a CHO cell line expressing a recombinant therapeutic protein treated with inducers of protein expression.

Fomina-Yadlin D, Mujacic M, Maggiora K, Quesnell G, Saleem R, McGrew JT.

J Biotechnol. 2015 Oct 20;212:106-15. doi: 10.1016/j.jbiotec.2015.08.025. Epub 2015 Sep 7.

PMID:
26325199
7.

Discovery of transcription start sites in the Chinese hamster genome by next-generation RNA sequencing.

Jakobi T, Brinkrolf K, Tauch A, Noll T, Stoye J, Pühler A, Goesmann A.

J Biotechnol. 2014 Nov 20;190:64-75. doi: 10.1016/j.jbiotec.2014.07.437. Epub 2014 Jul 31.

PMID:
25086342
8.

An automated RNA-Seq analysis pipeline to identify and visualize differentially expressed genes and pathways in CHO cells.

Chen C, Le H, Goudar CT.

Biotechnol Prog. 2015 Sep-Oct;31(5):1150-62. doi: 10.1002/btpr.2137. Epub 2015 Jul 22.

PMID:
26150012
9.

Quality assessment of cross-species hybridization of CHO transcriptome on a mouse DNA oligo microarray.

Yee JC, Wlaschin KF, Chuah SH, Nissom PM, Hu WS.

Biotechnol Bioeng. 2008 Dec 15;101(6):1359-65. doi: 10.1002/bit.21984.

PMID:
18814282
10.

Developing genomic platforms for Chinese hamster ovary cells.

Kantardjieff A, Nissom PM, Chuah SH, Yusufi F, Jacob NM, Mulukutla BC, Yap M, Hu WS.

Biotechnol Adv. 2009 Nov-Dec;27(6):1028-35. doi: 10.1016/j.biotechadv.2009.05.023. Epub 2009 May 24.

PMID:
19470403
11.

A scaffold for the Chinese hamster genome.

Wlaschin KF, Hu WS.

Biotechnol Bioeng. 2007 Oct 1;98(2):429-39.

PMID:
17390381
12.

Profiling conserved microRNA expression in recombinant CHO cell lines using Illumina sequencing.

Hammond S, Swanberg JC, Polson SW, Lee KH.

Biotechnol Bioeng. 2012 Jun;109(6):1371-5. doi: 10.1002/bit.24415. Epub 2012 Jan 23.

13.

Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing.

Becker J, Hackl M, Rupp O, Jakobi T, Schneider J, Szczepanowski R, Bekel T, Borth N, Goesmann A, Grillari J, Kaltschmidt C, Noll T, Pühler A, Tauch A, Brinkrolf K.

J Biotechnol. 2011 Dec 10;156(3):227-35. doi: 10.1016/j.jbiotec.2011.09.014. Epub 2011 Sep 17.

PMID:
21945585
14.

Identification of a novel temperature sensitive promoter in CHO cells.

Thaisuchat H, Baumann M, Pontiller J, Hesse F, Ernst W.

BMC Biotechnol. 2011 May 12;11:51. doi: 10.1186/1472-6750-11-51.

15.

Construction of a public CHO cell line transcript database using versatile bioinformatics analysis pipelines.

Rupp O, Becker J, Brinkrolf K, Timmermann C, Borth N, Pühler A, Noll T, Goesmann A.

PLoS One. 2014 Jan 10;9(1):e85568. doi: 10.1371/journal.pone.0085568. eCollection 2014.

16.

Global insights into the Chinese hamster and CHO cell transcriptomes.

Vishwanathan N, Yongky A, Johnson KC, Fu HY, Jacob NM, Le H, Yusufi FN, Lee DY, Hu WS.

Biotechnol Bioeng. 2015 May;112(5):965-76. doi: 10.1002/bit.25513. Epub 2015 Mar 16.

PMID:
25450749
17.

EST sequencing for gene discovery in Chinese hamster ovary cells.

Wlaschin KF, Nissom PM, Gatti Mde L, Ong PF, Arleen S, Tan KS, Rink A, Cham B, Wong K, Yap M, Hu WS.

Biotechnol Bioeng. 2005 Sep 5;91(5):592-606.

PMID:
16003777
18.

The genomic sequence of the Chinese hamster ovary (CHO)-K1 cell line.

Xu X, Nagarajan H, Lewis NE, Pan S, Cai Z, Liu X, Chen W, Xie M, Wang W, Hammond S, Andersen MR, Neff N, Passarelli B, Koh W, Fan HC, Wang J, Gui Y, Lee KH, Betenbaugh MJ, Quake SR, Famili I, Palsson BO, Wang J.

Nat Biotechnol. 2011 Jul 31;29(8):735-41. doi: 10.1038/nbt.1932.

19.

The DNA methylation landscape of Chinese hamster ovary (CHO) DP-12 cells.

Wippermann A, Rupp O, Brinkrolf K, Hoffrogge R, Noll T.

J Biotechnol. 2015 Apr 10;199:38-46. doi: 10.1016/j.jbiotec.2015.02.014. Epub 2015 Feb 19.

20.

Transcriptome and proteome profiling to understanding the biology of high productivity CHO cells.

Nissom PM, Sanny A, Kok YJ, Hiang YT, Chuah SH, Shing TK, Lee YY, Wong KT, Hu WS, Sim MY, Philp R.

Mol Biotechnol. 2006 Oct;34(2):125-40.

PMID:
17172658

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