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Items: 1 to 20 of 99

1.

High-resolution transcription atlas of the mitotic cell cycle in budding yeast.

Granovskaia MV, Jensen LJ, Ritchie ME, Toedling J, Ning Y, Bork P, Huber W, Steinmetz LM.

Genome Biol. 2010;11(3):R24. doi: 10.1186/gb-2010-11-3-r24. Epub 2010 Mar 1.

2.

Bidirectional promoters generate pervasive transcription in yeast.

Xu Z, Wei W, Gagneur J, Perocchi F, Clauder-Münster S, Camblong J, Guffanti E, Stutz F, Huber W, Steinmetz LM.

Nature. 2009 Feb 19;457(7232):1033-7. doi: 10.1038/nature07728. Epub 2009 Jan 25.

3.

XUTs are a class of Xrn1-sensitive antisense regulatory non-coding RNA in yeast.

van Dijk EL, Chen CL, d'Aubenton-Carafa Y, Gourvennec S, Kwapisz M, Roche V, Bertrand C, Silvain M, Legoix-Né P, Loeillet S, Nicolas A, Thermes C, Morillon A.

Nature. 2011 Jun 22;475(7354):114-7. doi: 10.1038/nature10118.

PMID:
21697827
4.

Experimental annotation of the human pathogen Candida albicans coding and noncoding transcribed regions using high-resolution tiling arrays.

Sellam A, Hogues H, Askew C, Tebbji F, van Het Hoog M, Lavoie H, Kumamoto CA, Whiteway M, Nantel A.

Genome Biol. 2010;11(7):R71. doi: 10.1186/gb-2010-11-7-r71. Epub 2010 Jul 9.

5.

Genome-wide transcriptome analysis in yeast using high-density tiling arrays.

David L, Clauder-Münster S, Steinmetz LM.

Methods Mol Biol. 2011;759:107-23. doi: 10.1007/978-1-61779-173-4_7.

PMID:
21863484
6.

3' Untranslated regions mediate transcriptional interference between convergent genes both locally and ectopically in Saccharomyces cerevisiae.

Wang L, Jiang N, Wang L, Fang O, Leach LJ, Hu X, Luo Z.

PLoS Genet. 2014 Jan;10(1):e1004021. doi: 10.1371/journal.pgen.1004021. Epub 2014 Jan 23.

7.

Pervasive transcription - Lessons from yeast.

Tisseur M, Kwapisz M, Morillon A.

Biochimie. 2011 Nov;93(11):1889-96. doi: 10.1016/j.biochi.2011.07.001. Epub 2011 Jul 12. Review.

PMID:
21771634
8.

Antisense expression increases gene expression variability and locus interdependency.

Xu Z, Wei W, Gagneur J, Clauder-Münster S, Smolik M, Huber W, Steinmetz LM.

Mol Syst Biol. 2011 Feb 15;7:468. doi: 10.1038/msb.2011.1.

9.

Unexpected complexity of the budding yeast transcriptome.

Ito T, Miura F, Onda M.

IUBMB Life. 2008 Dec;60(12):775-81. doi: 10.1002/iub.121. Review.

10.

Comparative analysis of structured RNAs in S. cerevisiae indicates a multitude of different functions.

Steigele S, Huber W, Stocsits C, Stadler PF, Nieselt K.

BMC Biol. 2007 Jun 18;5:25.

11.

A genome-wide transcriptional analysis of the mitotic cell cycle.

Cho RJ, Campbell MJ, Winzeler EA, Steinmetz L, Conway A, Wodicka L, Wolfsberg TG, Gabrielian AE, Landsman D, Lockhart DJ, Davis RW.

Mol Cell. 1998 Jul;2(1):65-73.

12.

Meiosis-induced alterations in transcript architecture and noncoding RNA expression in S. cerevisiae.

Kim Guisbert KS, Zhang Y, Flatow J, Hurtado S, Staley JP, Lin S, Sontheimer EJ.

RNA. 2012 Jun;18(6):1142-53. doi: 10.1261/rna.030510.111. Epub 2012 Apr 26.

13.

Genome-wide profiling of untranslated regions by paired-end ditag sequencing reveals unexpected transcriptome complexity in yeast.

Kang YN, Lai DP, Ooi HS, Shen TT, Kou Y, Tian J, Czajkowsky DM, Shao Z, Zhao X.

Mol Genet Genomics. 2015 Feb;290(1):217-24. doi: 10.1007/s00438-014-0913-6. Epub 2014 Sep 12.

PMID:
25213602
14.

Examining the condition-specific antisense transcription in S. cerevisiae and S. paradoxus.

Swamy KB, Lin CH, Yen MR, Wang CY, Wang D.

BMC Genomics. 2014 Jun 25;15:521. doi: 10.1186/1471-2164-15-521.

15.

Nutrient-regulated antisense and intragenic RNAs modulate a signal transduction pathway in yeast.

Nishizawa M, Komai T, Katou Y, Shirahige K, Ito T, Toh-E A.

PLoS Biol. 2008 Dec 23;6(12):2817-30. doi: 10.1371/journal.pbio.0060326.

16.

Execution of the meiotic noncoding RNA expression program and the onset of gametogenesis in yeast require the conserved exosome subunit Rrp6.

Lardenois A, Liu Y, Walther T, Chalmel F, Evrard B, Granovskaia M, Chu A, Davis RW, Steinmetz LM, Primig M.

Proc Natl Acad Sci U S A. 2011 Jan 18;108(3):1058-63. doi: 10.1073/pnas.1016459108. Epub 2010 Dec 13.

17.

Understanding non-coding DNA regions in yeast.

Schlackow M, Gullerova M.

Biochem Soc Trans. 2013 Dec;41(6):1654-9. doi: 10.1042/BST20130144. Review.

PMID:
24256270
18.

Unconventional genomic architecture in the budding yeast saccharomyces cerevisiae masks the nested antisense gene NAG1.

Ma J, Dobry CJ, Krysan DJ, Kumar A.

Eukaryot Cell. 2008 Aug;7(8):1289-98. doi: 10.1128/EC.00053-08. Epub 2008 Feb 29.

19.

Global identification of noncoding RNAs in Saccharomyces cerevisiae by modulating an essential RNA processing pathway.

Samanta MP, Tongprasit W, Sethi H, Chin CS, Stolc V.

Proc Natl Acad Sci U S A. 2006 Mar 14;103(11):4192-7. Epub 2006 Mar 6.

20.

Enrichment of unstable non-coding RNAs and their genome-wide identification.

Neil H, Jacquier A.

Methods Mol Biol. 2011;759:87-106. doi: 10.1007/978-1-61779-173-4_6.

PMID:
21863483

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