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Items: 1 to 20 of 54

1.

Quality control and reproducibility in DNA microarray experiments.

Fujita A, Sato JR, DA Silva FH, Galvão MC, Sogayar MC, Miyano S.

Genome Inform. 2009 Oct;23(1):21-31.

PMID:
20180259
2.

Spearman's footrule as a measure of cDNA microarray reproducibility.

Kim BS, Rha SY, Cho GB, Chung HC.

Genomics. 2004 Aug;84(2):441-8.

PMID:
15234007
3.

Replication, variation and normalisation in microarray experiments.

Altman N.

Appl Bioinformatics. 2005;4(1):33-44.

PMID:
16000011
4.

Correlation analysis of external RNA controls reveals its utility for assessment of microarray assay.

Fan X, Fang H, Hong H, Perkins R, Shi L, Tong W.

Anal Biochem. 2009 Feb 15;385(2):203-7. doi: 10.1016/j.ab.2008.11.019. Epub 2008 Dec 6.

PMID:
19059192
5.

Array-A-Lizer: a serial DNA microarray quality analyzer.

Petri A, Fleckner J, Matthiessen MW.

BMC Bioinformatics. 2004 Feb 9;5:12.

6.

Reproducibility of microarray data: a further analysis of microarray quality control (MAQC) data.

Chen JJ, Hsueh HM, Delongchamp RR, Lin CJ, Tsai CA.

BMC Bioinformatics. 2007 Oct 25;8:412.

7.

Analysis of host response to bacterial infection using error model based gene expression microarray experiments.

Stekel DJ, Sarti D, Trevino V, Zhang L, Salmon M, Buckley CD, Stevens M, Pallen MJ, Penn C, Falciani F.

Nucleic Acids Res. 2005 Mar 30;33(6):e53. Erratum in: Nucleic Acids Res. 2005;33(7):2352-3.

8.

Quick and simple: quality control of microarray data.

Sauer U, Preininger C, Hany-Schmatzberger R.

Bioinformatics. 2005 Apr 15;21(8):1572-8. Epub 2004 Dec 21.

PMID:
15615693
9.

A statistical framework for the design of microarray experiments and effective detection of differential gene expression.

Zhang SD, Gant TW.

Bioinformatics. 2004 Nov 1;20(16):2821-8. Epub 2004 Jun 4.

PMID:
15180939
10.

A novel strategy for microarray quality control using Bayesian networks.

Hautaniemi S, Edgren H, Vesanen P, Wolf M, Järvinen AK, Yli-Harja O, Astola J, Kallioniemi O, Monni O.

Bioinformatics. 2003 Nov 1;19(16):2031-8.

PMID:
14594707
11.

Estimation and control of multiple testing error rates for microarray studies.

Pounds SB.

Brief Bioinform. 2006 Mar;7(1):25-36. Review.

PMID:
16761362
12.

Evaluation of automated and conventional microarray hybridization: a question of data quality and best practice?

Peeva VK, Lynch JL, Desilva CJ, Swanson NR.

Biotechnol Appl Biochem. 2008 Aug;50(Pt 4):181-90.

PMID:
17953513
13.

Utilization of a labeled tracking oligonucleotide for visualization and quality control of spotted 70-mer arrays.

Hessner MJ, Singh VK, Wang X, Khan S, Tschannen MR, Zahrt TC.

BMC Genomics. 2004 Feb 9;5(1):12.

14.

A meta-data based method for DNA microarray imputation.

Jörnsten R, Ouyang M, Wang HY.

BMC Bioinformatics. 2007 Mar 29;8:109.

15.

QA/QC: challenges and pitfalls facing the microarray community and regulatory agencies.

Shi L, Tong W, Goodsaid F, Frueh FW, Fang H, Han T, Fuscoe JC, Casciano DA.

Expert Rev Mol Diagn. 2004 Nov;4(6):761-77. Review.

PMID:
15525219
16.

A conditional density error model for the statistical analysis of microarray data.

Love B, Rank DR, Penn SG, Jenkins DA, Thomas RS.

Bioinformatics. 2002 Aug;18(8):1064-72.

PMID:
12176829
17.

Universal external RNA controls for microbial gene expression analysis using microarray and qRT-PCR.

Liu ZL, Slininger PJ.

J Microbiol Methods. 2007 Mar;68(3):486-96. Epub 2006 Dec 14.

PMID:
17173990
18.

Microarray data quality analysis: lessons from the AFGC project. Arabidopsis Functional Genomics Consortium.

Finkelstein D, Ewing R, Gollub J, Sterky F, Cherry JM, Somerville S.

Plant Mol Biol. 2002 Jan;48(1-2):119-31. Review.

PMID:
11860205
19.
20.

Evaluation of quality-control criteria for microarray gene expression analysis.

Dumur CI, Nasim S, Best AM, Archer KJ, Ladd AC, Mas VR, Wilkinson DS, Garrett CT, Ferreira-Gonzalez A.

Clin Chem. 2004 Nov;50(11):1994-2002. Epub 2004 Sep 13.

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