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Items: 1 to 20 of 68

1.

Sphericity of a protein via the beta-complex.

Kim DS, Kim JK, Won CI, Kim CM, Park JY, Bhak J.

J Mol Graph Model. 2010 Apr;28(7):636-49. doi: 10.1016/j.jmgm.2010.01.001. Epub 2010 Jan 15.

PMID:
20129805
2.

Molecular surface generation using a variable-radius solvent probe.

Bhat S, Purisima EO.

Proteins. 2006 Jan 1;62(1):244-61.

PMID:
16287115
3.

Development of new indices to evaluate protein-protein interfaces: assembling space volume, assembling space distance, and global shape descriptor.

Maeda MH, Kinoshita K.

J Mol Graph Model. 2009 Feb;27(6):706-11. doi: 10.1016/j.jmgm.2008.11.002. Epub 2008 Nov 8.

PMID:
19110457
4.

Three-dimensional computation of atom depth in complex molecular structures.

Varrazzo D, Bernini A, Spiga O, Ciutti A, Chiellini S, Venditti V, Bracci L, Niccolai N.

Bioinformatics. 2005 Jun 15;21(12):2856-60. Epub 2005 Apr 12.

PMID:
15827080
5.

Global characterization of protein secondary structures. Analysis of computer-modeled protein unfolding.

Arteca GA, Nilsson O, Tapia O.

J Mol Graph. 1993 Sep;11(3):193-9, 189-90.

PMID:
8110665
6.

Statistical and molecular dynamics studies of buried waters in globular proteins.

Park S, Saven JG.

Proteins. 2005 Aug 15;60(3):450-63.

PMID:
15937899
7.

Detection of non-topological motifs in protein structures.

Alesker V, Nussinov R, Wolfson HJ.

Protein Eng. 1996 Dec;9(12):1103-19.

PMID:
9010924
8.

Efficient shape descriptors for feature extraction in 3D protein structures.

Ranganath A, Shet KC, Vidyavathi N.

In Silico Biol. 2007;7(2):169-74.

PMID:
17688442
9.

Symmetric connectivity of secondary structure elements enhances the diversity of folding pathways.

Klimov DK, Thirumalai D.

J Mol Biol. 2005 Nov 11;353(5):1171-86. Epub 2005 Sep 29.

PMID:
16219323
10.

beta-Barrel transmembrane proteins: Geometric modelling, detection of transmembrane region, and structural properties.

Valavanis IK, Bagos PG, Emiris IZ.

Comput Biol Chem. 2006 Dec;30(6):416-24. Epub 2006 Nov 9.

PMID:
17097352
11.

Pocket extraction on proteins via the Voronoi diagram of spheres.

Kim D, Cho CH, Cho Y, Ryu J, Bhak J, Kim DS.

J Mol Graph Model. 2008 Apr;26(7):1104-12. Epub 2007 Oct 7.

PMID:
18023220
12.
13.

Rapid atomic density methods for molecular shape characterization.

Mitchell JC, Kerr R, Ten Eyck LF.

J Mol Graph Model. 2001;19(3-4):325-30, 388-90.

PMID:
11449571
15.

Predicting alpha-helix and beta-strand segments of globular proteins.

Solovyev VV, Salamov AA.

Comput Appl Biosci. 1994 Dec;10(6):661-9.

PMID:
7704665
17.

Amide I two-dimensional infrared spectroscopy of proteins.

Ganim Z, Chung HS, Smith AW, Deflores LP, Jones KC, Tokmakoff A.

Acc Chem Res. 2008 Mar;41(3):432-41. doi: 10.1021/ar700188n. Epub 2008 Feb 21. Review.

PMID:
18288813
18.

CAD-ICAD complex structure derived from saturation transfer experiment and simulated annealing without using pairwise NOE information.

Matsuda T, Nakajima N, Yamazaki T, Nakamura H.

J Mol Recognit. 2004 Jan-Feb;17(1):41-50.

PMID:
14872536
19.

Compactness determines protein folding type.

Galzitskaya OV, Bogatyreva NS, Ivankov DN.

J Bioinform Comput Biol. 2008 Aug;6(4):667-80.

PMID:
18763735
20.

[A turning point in the knowledge of the structure-function-activity relations of elastin].

Alix AJ.

J Soc Biol. 2001;195(2):181-93. Review. French.

PMID:
11727705

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