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Items: 1 to 20 of 247

1.

The behaviour of 5-hydroxymethylcytosine in bisulfite sequencing.

Huang Y, Pastor WA, Shen Y, Tahiliani M, Liu DR, Rao A.

PLoS One. 2010 Jan 26;5(1):e8888. doi: 10.1371/journal.pone.0008888.

2.

High sensitivity 5-hydroxymethylcytosine detection in Balb/C brain tissue.

Davis T, Vaisvila R.

J Vis Exp. 2011 Feb 1;(48). pii: 2661. doi: 10.3791/2661.

3.
4.

Tet-assisted bisulfite sequencing of 5-hydroxymethylcytosine.

Yu M, Hon GC, Szulwach KE, Song CX, Jin P, Ren B, He C.

Nat Protoc. 2012 Dec;7(12):2159-70. doi: 10.1038/nprot.2012.137. Epub 2012 Nov 29.

5.
6.

The anti-CMS technique for genome-wide mapping of 5-hydroxymethylcytosine.

Huang Y, Pastor WA, Zepeda-Martínez JA, Rao A.

Nat Protoc. 2012 Oct;7(10):1897-908. doi: 10.1038/nprot.2012.103. Epub 2012 Sep 27.

7.
8.

Enzymatic approaches and bisulfite sequencing cannot distinguish between 5-methylcytosine and 5-hydroxymethylcytosine in DNA.

Nestor C, Ruzov A, Meehan R, Dunican D.

Biotechniques. 2010 Apr;48(4):317-9. doi: 10.2144/000113403.

9.

Bisulfite genomic sequencing: systematic investigation of critical experimental parameters.

Grunau C, Clark SJ, Rosenthal A.

Nucleic Acids Res. 2001 Jul 1;29(13):E65-5.

10.

Selective capture of 5-hydroxymethylcytosine from genomic DNA.

Li Y, Song CX, He C, Jin P.

J Vis Exp. 2012 Oct 5;(68). pii: 4441. doi: 10.3791/4441.

11.

Chemistry of bisulfite genomic sequencing; advances and issues.

Hayatsu H, Negishi K, Shiraishi M, Tsuji K, Moriyama K.

Nucleic Acids Symp Ser (Oxf). 2007;(51):47-8.

PMID:
18029579
12.

MLML: consistent simultaneous estimates of DNA methylation and hydroxymethylation.

Qu J, Zhou M, Song Q, Hong EE, Smith AD.

Bioinformatics. 2013 Oct 15;29(20):2645-6. doi: 10.1093/bioinformatics/btt459. Epub 2013 Aug 21.

13.

Whole-genome analysis of 5-hydroxymethylcytosine and 5-methylcytosine at base resolution in the human brain.

Wen L, Li X, Yan L, Tan Y, Li R, Zhao Y, Wang Y, Xie J, Zhang Y, Song C, Yu M, Liu X, Zhu P, Li X, Hou Y, Guo H, Wu X, He C, Li R, Tang F, Qiao J.

Genome Biol. 2014 Mar 4;15(3):R49. doi: 10.1186/gb-2014-15-3-r49.

14.

Accelerated bisulfite-deamination of cytosine in the genomic sequencing procedure for DNA methylation analysis.

Hayatsu H, Negishi K, Shiraishi M.

Nucleic Acids Symp Ser (Oxf). 2004;(48):261-2.

PMID:
17150578
15.

Reaction of bisulfite with the 5-hydroxymethyl group in pyrimidines and in phage DNAs.

Hayatsu H, Shiragami M.

Biochemistry. 1979 Feb 20;18(4):632-7.

PMID:
420806
16.

CpG site-specific alteration of hydroxymethylcytosine to methylcytosine beyond DNA replication.

Kubosaki A, Tomaru Y, Furuhata E, Suzuki T, Shin JW, Simon C, Ando Y, Hasegawa R, Hayashizaki Y, Suzuki H.

Biochem Biophys Res Commun. 2012 Sep 14;426(1):141-7. doi: 10.1016/j.bbrc.2012.08.053. Epub 2012 Aug 17.

17.

Identification and resolution of artifacts in bisulfite sequencing.

Warnecke PM, Stirzaker C, Song J, Grunau C, Melki JR, Clark SJ.

Methods. 2002 Jun;27(2):101-7.

PMID:
12095266
19.

Genome-wide hydroxymethylation tested using the HELP-GT assay shows redistribution in cancer.

Bhattacharyya S, Yu Y, Suzuki M, Campbell N, Mazdo J, Vasanthakumar A, Bhagat TD, Nischal S, Christopeit M, Parekh S, Steidl U, Godley L, Maitra A, Greally JM, Verma A.

Nucleic Acids Res. 2013 Sep;41(16):e157. doi: 10.1093/nar/gkt601. Epub 2013 Jul 16.

20.

Single base resolution analysis of 5-methylcytosine and 5-hydroxymethylcytosine by RRBS and TAB-RRBS.

Hahn MA, Li AX, Wu X, Pfeifer GP.

Methods Mol Biol. 2015;1238:273-87. doi: 10.1007/978-1-4939-1804-1_14.

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