Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 79

1.

Bidirectional best hit r-window gene clusters.

Zhang M, Leong HW.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S63. doi: 10.1186/1471-2105-11-S1-S63.

2.

Identifying conserved gene clusters in the presence of homology families.

He X, Goldwasser MH.

J Comput Biol. 2005 Jul-Aug;12(6):638-56.

PMID:
16108708
3.

Gene team tree: a hierarchical representation of gene teams for all gap lengths.

Zhang M, Leong HW.

J Comput Biol. 2009 Oct;16(10):1383-98. doi: 10.1089/cmb.2009.0093.

PMID:
19803736
4.

Large-scale analysis of gene clustering in bacteria.

Yang Q, Sze SH.

Genome Res. 2008 Jun;18(6):949-56. doi: 10.1101/gr.072322.107. Epub 2008 Apr 4.

5.

Detecting gene clusters under evolutionary constraint in a large number of genomes.

Ling X, He X, Xin D.

Bioinformatics. 2009 Mar 1;25(5):571-7. doi: 10.1093/bioinformatics/btp027. Epub 2009 Jan 21.

PMID:
19158161
7.

A tight link between orthologs and bidirectional best hits in bacterial and archaeal genomes.

Wolf YI, Koonin EV.

Genome Biol Evol. 2012;4(12):1286-94. doi: 10.1093/gbe/evs100.

8.

The statistical analysis of spatially clustered genes under the maximum gap criterion.

Hoberman R, Sankoff D, Durand D.

J Comput Biol. 2005 Oct;12(8):1083-102.

PMID:
16241899
9.

Gene proximity analysis across whole genomes via PQ trees.

Landau GM, Parida L, Weimann O.

J Comput Biol. 2005 Dec;12(10):1289-306.

PMID:
16379535
10.

Analysis of the cellular functions of Escherichia coli operons and their conservation in Bacillus subtilis.

de Daruvar A, Collado-Vides J, Valencia A.

J Mol Evol. 2002 Aug;55(2):211-21.

PMID:
12107597
11.
12.

Gene teams: a new formalization of gene clusters for comparative genomics.

Luc N, Risler JL, Bergeron A, Raffinot M.

Comput Biol Chem. 2003 Feb;27(1):59-67.

PMID:
12798040
13.
14.

Computation of median gene clusters.

Böcker S, Jahn K, Mixtacki J, Stoye J.

J Comput Biol. 2009 Aug;16(8):1085-99. doi: 10.1089/cmb.2009.0098.

PMID:
19689215
15.

Conserved gene clusters in bacterial genomes provide further support for the primacy of RNA.

Siefert JL, Martin KA, Abdi F, Widger WR, Fox GE.

J Mol Evol. 1997 Nov;45(5):467-72.

PMID:
9342394
17.

Operon prediction using both genome-specific and general genomic information.

Dam P, Olman V, Harris K, Su Z, Xu Y.

Nucleic Acids Res. 2007;35(1):288-98. Epub 2006 Dec 14.

18.

The entire organization of transcription units on the Bacillus subtilis genome.

Kobayashi H, Akitomi J, Fujii N, Kobayashi K, Altaf-Ul-Amin M, Kurokawa K, Ogasawara N, Kanaya S.

BMC Genomics. 2007 Jun 28;8:197.

19.

Conservation of gene co-regulation between two prokaryotes: Bacillus subtilis and Escherichia coli.

Okuda S, Kawashima S, Goto S, Kanehisa M.

Genome Inform. 2005;16(1):116-24.

PMID:
16362913
20.

A hybrid gene team model and its application to genome analysis.

Kim S, Choi JH, Saple A, Yang J.

J Bioinform Comput Biol. 2006 Apr;4(2):171-96.

PMID:
16819779

Supplemental Content

Support Center