Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 141

  • Showing results for a modified search because your search retrieved no results.
1.

A hub-attachment based method to detect functional modules from confidence-scored protein interactions and expression profiles.

Chin CH, Chen SH, Ho CW, Ko MT, Lin CY.

BMC Bioinformatics. 2010 Jan 18;11 Suppl 1:S25. doi: 10.1186/1471-2105-11-S1-S25.

2.

Towards the identification of protein complexes and functional modules by integrating PPI network and gene expression data.

Li M, Wu X, Wang J, Pan Y.

BMC Bioinformatics. 2012 May 23;13:109. doi: 10.1186/1471-2105-13-109.

3.

Spotlight: assembly of protein complexes by integrating graph clustering methods.

Chin CH, Chen SH, Chen CY, Hsiung CA, Ho CW, Ko MT, Lin CY.

Gene. 2013 Apr 10;518(1):42-51. doi: 10.1016/j.gene.2012.11.087. Epub 2012 Dec 26.

PMID:
23274651
4.

Identification of functional hubs and modules by converting interactome networks into hierarchical ordering of proteins.

Cho YR, Zhang A.

BMC Bioinformatics. 2010 Apr 29;11 Suppl 3:S3. doi: 10.1186/1471-2105-11-S3-S3.

5.

MCL-CAw: a refinement of MCL for detecting yeast complexes from weighted PPI networks by incorporating core-attachment structure.

Srihari S, Ning K, Leong HW.

BMC Bioinformatics. 2010 Oct 12;11:504. doi: 10.1186/1471-2105-11-504.

6.

Detecting functional modules in the yeast protein-protein interaction network.

Chen J, Yuan B.

Bioinformatics. 2006 Sep 15;22(18):2283-90. Epub 2006 Jul 12.

PMID:
16837529
7.

Detection of functional modules from protein interaction networks with an enhanced random walk based algorithm.

Cai B, Wang H, Zheng H, Wang H.

Int J Comput Biol Drug Des. 2011;4(3):290-306. doi: 10.1504/IJCBDD.2011.041416. Epub 2011 Jul 21.

PMID:
21778561
8.

Efficient and accurate Greedy Search Methods for mining functional modules in protein interaction networks.

He J, Li C, Ye B, Zhong W.

BMC Bioinformatics. 2012 Jun 25;13 Suppl 10:S19. doi: 10.1186/1471-2105-13-S10-S19.

9.

Improving protein complex prediction by reconstructing a high-confidence protein-protein interaction network of Escherichia coli from different physical interaction data sources.

Taghipour S, Zarrineh P, Ganjtabesh M, Nowzari-Dalini A.

BMC Bioinformatics. 2017 Jan 3;18(1):10. doi: 10.1186/s12859-016-1422-x.

10.

A core-attachment based method to detect protein complexes in PPI networks.

Wu M, Li X, Kwoh CK, Ng SK.

BMC Bioinformatics. 2009 Jun 2;10:169. doi: 10.1186/1471-2105-10-169.

11.

A hybrid graph-theoretic method for mining overlapping functional modules in large sparse protein interaction networks.

Zhang S, Liu HW, Ning XM, Zhang XS.

Int J Data Min Bioinform. 2009;3(1):68-84.

PMID:
19432377
12.

Edge-based scoring and searching method for identifying condition-responsive protein-protein interaction sub-network.

Guo Z, Wang L, Li Y, Gong X, Yao C, Ma W, Wang D, Li Y, Zhu J, Zhang M, Yang D, Rao S, Wang J.

Bioinformatics. 2007 Aug 15;23(16):2121-8. Epub 2007 Jun 1. Erratum in: Bioinformatics. 2009 Jun 15;25(12):1574. Wang, Lei [added]; Rao, Shaoqi [added].

PMID:
17545181
13.

Clustering algorithms for detecting functional modules in protein interaction networks.

Gao L, Sun PG, Song J.

J Bioinform Comput Biol. 2009 Feb;7(1):217-42.

PMID:
19226668
14.

Combining functional and topological properties to identify core modules in protein interaction networks.

Lubovac Z, Gamalielsson J, Olsson B.

Proteins. 2006 Sep 1;64(4):948-59.

PMID:
16794996
15.

Assessment of protein domain fusions in human protein interaction networks prediction: application to the human kinetochore model.

Morilla I, Lees JG, Reid AJ, Orengo C, Ranea JA.

N Biotechnol. 2010 Dec 31;27(6):755-65. doi: 10.1016/j.nbt.2010.09.005. Epub 2010 Sep 17.

PMID:
20851221
16.

Identification of functional modules from conserved ancestral protein-protein interactions.

Dutkowski J, Tiuryn J.

Bioinformatics. 2007 Jul 1;23(13):i149-58.

PMID:
17646291
17.

Identifying functional modules using expression profiles and confidence-scored protein interactions.

Ulitsky I, Shamir R.

Bioinformatics. 2009 May 1;25(9):1158-64. doi: 10.1093/bioinformatics/btp118. Epub 2009 Mar 17.

PMID:
19297352
18.

A hybrid clustering algorithm for identifying modules in Protein-Protein Interaction networks.

Yu L, Gao L, Sun PG.

Int J Data Min Bioinform. 2010;4(5):600-15.

PMID:
21133044
19.

Identification of hierarchical and overlapping functional modules in PPI networks.

Wang J, Ren J, Li M, Wu FX.

IEEE Trans Nanobioscience. 2012 Dec;11(4):386-93. doi: 10.1109/TNB.2012.2210907. Epub 2012 Aug 30.

PMID:
22955967
20.

Supplemental Content

Support Center