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Co-expression of neighboring genes in the zebrafish (Danio rerio) genome.

Tsai HK, Huang PY, Kao CY, Wang D.

Int J Mol Sci. 2009 Aug 21;10(8):3658-70. doi: 10.3390/ijms10083658.


Positive correlation between gene coexpression and positional clustering in the zebrafish genome.

Ng YK, Wu W, Zhang L.

BMC Genomics. 2009 Jan 22;10:42. doi: 10.1186/1471-2164-10-42.


Identification of a new pebp2alphaA2 isoform from zebrafish runx2 capable of inducing osteocalcin gene expression in vitro.

Pinto JP, Conceição NM, Viegas CS, Leite RB, Hurst LD, Kelsh RN, Cancela ML.

J Bone Miner Res. 2005 Aug;20(8):1440-53.


The evolution of tachykinin/tachykinin receptor (TAC/TACR) in vertebrates and molecular identification of the TAC3/TACR3 system in zebrafish (Danio rerio).

Zhou W, Li S, Liu Y, Qi X, Chen H, Cheng CH, Liu X, Zhang Y, Lin H.

Mol Cell Endocrinol. 2012 Sep 25;361(1-2):202-12. doi: 10.1016/j.mce.2012.04.007.


The rapid generation of chimerical genes expanding protein diversity in zebrafish.

Fu B, Chen M, Zou M, Long M, He S.

BMC Genomics. 2010 Nov 24;11:657. doi: 10.1186/1471-2164-11-657.


Comparative genomics provides evidence for an ancient genome duplication event in fish.

Taylor JS, Van de Peer Y, Braasch I, Meyer A.

Philos Trans R Soc Lond B Biol Sci. 2001 Oct 29;356(1414):1661-79.


Co-expression of adjacent genes in yeast cannot be simply attributed to shared regulatory system.

Tsai HK, Su CP, Lu MY, Shih CH, Wang D.

BMC Genomics. 2007 Oct 3;8:352.


Dynamic nucleosome organization at hox promoters during zebrafish embryogenesis.

Weicksel SE, Xu J, Sagerström CG.

PLoS One. 2013 May 9;8(5):e63175. doi: 10.1371/journal.pone.0063175.


The cellular retinol-binding protein genes are duplicated and differentially transcribed in the developing and adult zebrafish (Danio rerio).

Liu RZ, Sun Q, Thisse C, Thisse B, Wright JM, Denovan-Wright EM.

Mol Biol Evol. 2005 Mar;22(3):469-77. Erratum in: Mol Biol Evol. 2005 Apr;22(4):1157.


Characterization and expression analysis of mcoln1.1 and mcoln1.2, the putative zebrafish co-orthologs of the gene responsible for human mucolipidosis type IV.

Benini A, Bozzato A, Mantovanelli S, Calvarini L, Giacopuzzi E, Bresciani R, Moleri S, Zizioli D, Beltrame M, Borsani G.

Int J Dev Biol. 2013;57(1):85-93. doi: 10.1387/ijdb.120033gb.


Genomic annotation and transcriptome analysis of the zebrafish (Danio rerio) hox complex with description of a novel member, hox b 13a.

Corredor-Adámez M, Welten MC, Spaink HP, Jeffery JE, Schoon RT, de Bakker MA, Bagowski CP, Meijer AH, Verbeek FJ, Richardson MK.

Evol Dev. 2005 Sep-Oct;7(5):362-75.


Promoter-sharing by different genes in human genome--CPNE1 and RBM12 gene pair as an example.

Yang W, Ng P, Zhao M, Wong TK, Yiu SM, Lau YL.

BMC Genomics. 2008 Oct 3;9:456. doi: 10.1186/1471-2164-9-456.


Regulation of expression of zebrafish (Danio rerio) insulin-like growth factor 2 receptor: implications for evolution at the IGF2R locus.

Tsalavouta M, Astudillo O, Byrnes L, Nolan CM.

Evol Dev. 2009 Sep-Oct;11(5):546-58. doi: 10.1111/j.1525-142X.2009.00361.x.


Relaxin gene family in teleosts: phylogeny, syntenic mapping, selective constraint, and expression analysis.

Good-Avila SV, Yegorov S, Harron S, Bogerd J, Glen P, Ozon J, Wilson BC.

BMC Evol Biol. 2009 Dec 16;9:293. doi: 10.1186/1471-2148-9-293.


Duplicated zebrafish co-orthologs of parathyroid hormone-related peptide (PTHrP, Pthlh) play different roles in craniofacial skeletogenesis.

Yan YL, Bhattacharya P, He XJ, Ponugoti B, Marquardt B, Layman J, Grunloh M, Postlethwait JH, Rubin DA.

J Endocrinol. 2012 Sep;214(3):421-35. doi: 10.1530/JOE-12-0110.


Comparative genome analysis of the neurexin gene family in Danio rerio: insights into their functions and evolution.

Rissone A, Monopoli M, Beltrame M, Bussolino F, Cotelli F, Arese M.

Mol Biol Evol. 2007 Jan;24(1):236-52.


HNF factors form a network to regulate liver-enriched genes in zebrafish.

Cheng W, Guo L, Zhang Z, Soo HM, Wen C, Wu W, Peng J.

Dev Biol. 2006 Jun 15;294(2):482-96.

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