Format
Sort by

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 109

1.

Genome update: the 1000th genome--a cautionary tale.

Lagesen K, Ussery DW, Wassenaar TM.

Microbiology. 2010 Mar;156(Pt 3):603-8. doi: 10.1099/mic.0.038257-0.

PMID:
20093288
2.

Ten years of bacterial genome sequencing: comparative-genomics-based discoveries.

Binnewies TT, Motro Y, Hallin PF, Lund O, Dunn D, La T, Hampson DJ, Bellgard M, Wassenaar TM, Ussery DW.

Funct Integr Genomics. 2006 Jul;6(3):165-85. Review.

PMID:
16773396
4.
6.

PSAT: a web tool to compare genomic neighborhoods of multiple prokaryotic genomes.

Fong C, Rohmer L, Radey M, Wasnick M, Brittnacher MJ.

BMC Bioinformatics. 2008 Mar 26;9:170. doi: 10.1186/1471-2105-9-170.

7.

A database of phylogenetically atypical genes in archaeal and bacterial genomes, identified using the DarkHorse algorithm.

Podell S, Gaasterland T, Allen EE.

BMC Bioinformatics. 2008 Oct 7;9:419. doi: 10.1186/1471-2105-9-419.

8.

Estimation of the number of authentic orphan genes in bacterial genomes.

Fukuchi S, Nishikawa K.

DNA Res. 2004 Aug 31;11(4):219-31, 311-313.

PMID:
15500248
9.

Status of genome projects for nonpathogenic bacteria and archaea.

Nelson KE, Paulsen IT, Heidelberg JF, Fraser CM.

Nat Biotechnol. 2000 Oct;18(10):1049-54. Review.

PMID:
11017041
10.

HEG-DB: a database of predicted highly expressed genes in prokaryotic complete genomes under translational selection.

Puigbò P, Romeu A, Garcia-Vallvé S.

Nucleic Acids Res. 2008 Jan;36(Database issue):D524-7.

11.

tRNADB-CE: tRNA gene database curated manually by experts.

Abe T, Ikemura T, Ohara Y, Uehara H, Kinouchi M, Kanaya S, Yamada Y, Muto A, Inokuchi H.

Nucleic Acids Res. 2009 Jan;37(Database issue):D163-8. doi: 10.1093/nar/gkn692.

12.

Prokaryotic genomes: the emerging paradigm of genome-based microbiology.

Koonin EV, Galperin MY.

Curr Opin Genet Dev. 1997 Dec;7(6):757-63. Review.

PMID:
9468784
13.

Using homolog groups to create a whole-genomic tree of free-living organisms: an update.

House CH, Fitz-Gibbon ST.

J Mol Evol. 2002 Apr;54(4):539-47.

PMID:
11956692
14.

GenColors: annotation and comparative genomics of prokaryotes made easy.

Romualdi A, Felder M, Rose D, Gausmann U, Schilhabel M, Glöckner G, Platzer M, Sühnel J.

Methods Mol Biol. 2007;395:75-96.

PMID:
17993668
15.

The Genomes On Line Database (GOLD) v.2: a monitor of genome projects worldwide.

Liolios K, Tavernarakis N, Hugenholtz P, Kyrpides NC.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D332-4.

16.

AlterORF: a database of alternate open reading frames.

Pedroso I, Rivera G, Lazo F, Chacón M, Ossandón F, Veloso FA, Holmes DS.

Nucleic Acids Res. 2008 Jan;36(Database issue):D517-8.

17.

The UCSC Archaeal Genome Browser.

Schneider KL, Pollard KS, Baertsch R, Pohl A, Lowe TM.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D407-10.

18.

Estimation of prokaryote genomic DNA G+C content by sequencing universally conserved genes.

Fournier PE, Suhre K, Fournous G, Raoult D.

Int J Syst Evol Microbiol. 2006 May;56(Pt 5):1025-9.

PMID:
16627649
19.

Genomes in flux: the evolution of archaeal and proteobacterial gene content.

Snel B, Bork P, Huynen MA.

Genome Res. 2002 Jan;12(1):17-25.

20.

Mining the genomes of plant pathogenic bacteria: how not to drown in gigabases of sequence.

Vinatzer BA, Yan S.

Mol Plant Pathol. 2008 Jan;9(1):105-18. doi: 10.1111/j.1364-3703.2007.00438.x. Review.

PMID:
18705888
Items per page

Supplemental Content

Support Center