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Items: 1 to 20 of 134

1.

Nitrogen depletion in the fission yeast Schizosaccharomyces pombe causes nucleosome loss in both promoters and coding regions of activated genes.

Kristell C, Orzechowski Westholm J, Olsson I, Ronne H, Komorowski J, Bjerling P.

Genome Res. 2010 Mar;20(3):361-71. doi: 10.1101/gr.098558.109. Epub 2010 Jan 19.

2.

Evidence for nucleosome depletion at active regulatory regions genome-wide.

Lee CK, Shibata Y, Rao B, Strahl BD, Lieb JD.

Nat Genet. 2004 Aug;36(8):900-5. Epub 2004 Jul 11.

PMID:
15247917
3.

Schizosaccharomyces pombe genome-wide nucleosome mapping reveals positioning mechanisms distinct from those of Saccharomyces cerevisiae.

Lantermann AB, Straub T, Strålfors A, Yuan GC, Ekwall K, Korber P.

Nat Struct Mol Biol. 2010 Feb;17(2):251-7. doi: 10.1038/nsmb.1741. Epub 2010 Jan 31.

PMID:
20118936
4.

Gcn5 facilitates Pol II progression, rather than recruitment to nucleosome-depleted stress promoters, in Schizosaccharomyces pombe.

Sansó M, Vargas-Pérez I, Quintales L, Antequera F, Ayté J, Hidalgo E.

Nucleic Acids Res. 2011 Aug;39(15):6369-79. doi: 10.1093/nar/gkr255. Epub 2011 Apr 22.

5.

Control of chromatin structure by spt6: different consequences in coding and regulatory regions.

Ivanovska I, Jacques PÉ, Rando OJ, Robert F, Winston F.

Mol Cell Biol. 2011 Feb;31(3):531-41. doi: 10.1128/MCB.01068-10. Epub 2010 Nov 22.

6.

Chemical map of Schizosaccharomyces pombe reveals species-specific features in nucleosome positioning.

Moyle-Heyrman G, Zaichuk T, Xi L, Zhang Q, Uhlenbeck OC, Holmgren R, Widom J, Wang JP.

Proc Natl Acad Sci U S A. 2013 Dec 10;110(50):20158-63. doi: 10.1073/pnas.1315809110. Epub 2013 Nov 25.

7.

Clustered regulatory elements at nucleosome-depleted regions punctuate a constant nucleosomal landscape in Schizosaccharomyces pombe.

Soriano I, Quintales L, Antequera F.

BMC Genomics. 2013 Nov 21;14:813. doi: 10.1186/1471-2164-14-813.

8.

Chromatin architectures at fission yeast transcriptional promoters and replication origins.

Givens RM, Lai WK, Rizzo JM, Bard JE, Mieczkowski PA, Leatherwood J, Huberman JA, Buck MJ.

Nucleic Acids Res. 2012 Aug;40(15):7176-89. doi: 10.1093/nar/gks351. Epub 2012 May 9.

9.
10.

Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions.

Schep AN, Buenrostro JD, Denny SK, Schwartz K, Sherlock G, Greenleaf WJ.

Genome Res. 2015 Nov;25(11):1757-70. doi: 10.1101/gr.192294.115. Epub 2015 Aug 27.

11.

Genome-wide cooperation by HAT Gcn5, remodeler SWI/SNF, and chaperone Ydj1 in promoter nucleosome eviction and transcriptional activation.

Qiu H, Chereji RV, Hu C, Cole HA, Rawal Y, Clark DJ, Hinnebusch AG.

Genome Res. 2016 Feb;26(2):211-25. doi: 10.1101/gr.196337.115. Epub 2015 Nov 24.

12.

Topoisomerase I regulates open chromatin and controls gene expression in vivo.

Durand-Dubief M, Persson J, Norman U, Hartsuiker E, Ekwall K.

EMBO J. 2010 Jul 7;29(13):2126-34. doi: 10.1038/emboj.2010.109. Epub 2010 Jun 4.

13.

Abo1, a conserved bromodomain AAA-ATPase, maintains global nucleosome occupancy and organisation.

Gal C, Murton HE, Subramanian L, Whale AJ, Moore KM, Paszkiewicz K, Codlin S, Bähler J, Creamer KM, Partridge JF, Allshire RC, Kent NA, Whitehall SK.

EMBO Rep. 2016 Jan;17(1):79-93. doi: 10.15252/embr.201540476. Epub 2015 Nov 18.

14.

CHD1 remodelers regulate nucleosome spacing in vitro and align nucleosomal arrays over gene coding regions in S. pombe.

Pointner J, Persson J, Prasad P, Norman-Axelsson U, Strålfors A, Khorosjutina O, Krietenstein N, Svensson JP, Ekwall K, Korber P.

EMBO J. 2012 Nov 28;31(23):4388-403. doi: 10.1038/emboj.2012.289. Epub 2012 Oct 26.

15.

A nucleosome turnover map reveals that the stability of histone H4 Lys20 methylation depends on histone recycling in transcribed chromatin.

Svensson JP, Shukla M, Menendez-Benito V, Norman-Axelsson U, Audergon P, Sinha I, Tanny JC, Allshire RC, Ekwall K.

Genome Res. 2015 Jun;25(6):872-83. doi: 10.1101/gr.188870.114. Epub 2015 Mar 16.

16.

A genome-wide role for CHD remodelling factors and Nap1 in nucleosome disassembly.

Walfridsson J, Khorosjutina O, Matikainen P, Gustafsson CM, Ekwall K.

EMBO J. 2007 Jun 20;26(12):2868-79. Epub 2007 May 17.

17.

Differential patterns of intronic and exonic DNA regions with respect to RNA polymerase II occupancy, nucleosome density and H3K36me3 marking in fission yeast.

Wilhelm BT, Marguerat S, Aligianni S, Codlin S, Watt S, Bähler J.

Genome Biol. 2011 Aug 22;12(8):R82. doi: 10.1186/gb-2011-12-8-r82.

18.

Spt6 regulates intragenic and antisense transcription, nucleosome positioning, and histone modifications genome-wide in fission yeast.

DeGennaro CM, Alver BH, Marguerat S, Stepanova E, Davis CP, Bähler J, Park PJ, Winston F.

Mol Cell Biol. 2013 Dec;33(24):4779-92. doi: 10.1128/MCB.01068-13. Epub 2013 Oct 7.

19.

Chromatin remodelers clear nucleosomes from intrinsically unfavorable sites to establish nucleosome-depleted regions at promoters.

Tolkunov D, Zawadzki KA, Singer C, Elfving N, Morozov AV, Broach JR.

Mol Biol Cell. 2011 Jun 15;22(12):2106-18. doi: 10.1091/mbc.E10-10-0826. Epub 2011 Apr 20.

20.

The ATP-dependent chromatin remodeling enzyme Fun30 represses transcription by sliding promoter-proximal nucleosomes.

Byeon B, Wang W, Barski A, Ranallo RT, Bao K, Schones DE, Zhao K, Wu C, Wu WH.

J Biol Chem. 2013 Aug 9;288(32):23182-93. doi: 10.1074/jbc.M113.471979. Epub 2013 Jun 18.

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