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Items: 1 to 20 of 181

1.

Optimized detection of sequence variation in heterozygous genomes using DNA microarrays with isothermal-melting probes.

Gresham D, Curry B, Ward A, Gordon DB, Brizuela L, Kruglyak L, Botstein D.

Proc Natl Acad Sci U S A. 2010 Jan 26;107(4):1482-7. doi: 10.1073/pnas.0913883107. Epub 2010 Jan 8.

2.

DNA microarray-based mutation discovery and genotyping.

Gresham D.

Methods Mol Biol. 2011;772:179-91. doi: 10.1007/978-1-61779-228-1_10.

PMID:
22065438
3.

Empirical evaluation of oligonucleotide probe selection for DNA microarrays.

Mulle JG, Patel VC, Warren ST, Hegde MR, Cutler DJ, Zwick ME.

PLoS One. 2010 Mar 29;5(3):e9921. doi: 10.1371/journal.pone.0009921.

4.

Single nucleotide polymorphism discrimination assisted by improved base stacking hybridization using oligonucleotide microarrays.

Wang D, Gao H, Zhang R, Ma X, Zhou Y, Cheng J.

Biotechniques. 2003 Aug;35(2):300-2, 304, 306 passim.

PMID:
12951771
5.
6.

HyBeacon probes: a new tool for DNA sequence detection and allele discrimination.

French DJ, Archard CL, Brown T, McDowell DG.

Mol Cell Probes. 2001 Dec;15(6):363-74.

PMID:
11851380
7.

Single nucleotide variation detection by ligation of universal probes on a 3D poyacrylamide gel DNA microarray.

Tang J, Li Y, Pan Z, Guo Y, Ma J, Ning S, Xiao P, Lu Z.

Hum Mutat. 2009 Oct;30(10):1460-8. doi: 10.1002/humu.21080.

PMID:
19621419
8.

A multi-array multi-SNP genotyping algorithm for Affymetrix SNP microarrays.

Xiao Y, Segal MR, Yang YH, Yeh RF.

Bioinformatics. 2007 Jun 15;23(12):1459-67. Epub 2007 Apr 25.

PMID:
17459966
9.

Robust detection and genotyping of single feature polymorphisms from gene expression data.

Wang M, Hu X, Li G, Leach LJ, Potokina E, Druka A, Waugh R, Kearsey MJ, Luo Z.

PLoS Comput Biol. 2009 Mar;5(3):e1000317. doi: 10.1371/journal.pcbi.1000317. Epub 2009 Mar 13.

10.

Active microelectronic array system for DNA hybridization, genotyping and pharmacogenomic applications.

Sosnowski R, Heller MJ, Tu E, Forster AH, Radtkey R.

Psychiatr Genet. 2002 Dec;12(4):181-92. Review.

PMID:
12454523
11.
12.

Hybridization probe pairs and single-labeled probes: an alternative approach for genotyping and quantification.

Froehlich T, Geulen O.

Methods Mol Biol. 2008;429:117-33. doi: 10.1007/978-1-60327-040-3_9.

PMID:
18695963
13.

HyBeacon probes for rapid DNA sequence detection and allele discrimination.

French DJ, McDowell DG, Debenham P, Gale N, Brown T.

Methods Mol Biol. 2008;429:171-85. doi: 10.1007/978-1-60327-040-3_12.

PMID:
18695966
14.

[Detection of single base polymorphism in p53 gene by ligase detection reaction and rolling circle amplification on microarrays].

Kashkin KN, Strizhkov BN, Griadunov DA, Surzhikov SA, Grechishnikova IV, Kreń≠ndlin EIa, Chupeeva VV, Evseev KB, Turygin AIu, Mirzabekov AD.

Mol Biol (Mosk). 2005 Jan-Feb;39(1):30-9. Russian.

PMID:
15773545
15.

Improved detection of global copy number variation using high density, non-polymorphic oligonucleotide probes.

Shen F, Huang J, Fitch KR, Truong VB, Kirby A, Chen W, Zhang J, Liu G, McCarroll SA, Jones KW, Shapero MH.

BMC Genet. 2008 Mar 28;9:27. doi: 10.1186/1471-2156-9-27.

16.

An optimized microarray platform for assaying genomic variation in Plasmodium falciparum field populations.

Tan JC, Miller BA, Tan A, Patel JJ, Cheeseman IH, Anderson TJ, Manske M, Maslen G, Kwiatkowski DP, Ferdig MT.

Genome Biol. 2011;12(4):R35. doi: 10.1186/gb-2011-12-4-r35. Epub 2011 Apr 8.

17.

Single nucleotide variation detection on 3D DNA microarray by ligation of two-terminal-modified universal probes.

Xiao P, Chen J, Tang J, Lu Z.

J Nanosci Nanotechnol. 2011 Sep;11(9):7627-34.

PMID:
22097467
18.

Interactively optimizing signal-to-noise ratios in expression profiling: project-specific algorithm selection and detection p-value weighting in Affymetrix microarrays.

Seo J, Bakay M, Chen YW, Hilmer S, Shneiderman B, Hoffman EP.

Bioinformatics. 2004 Nov 1;20(16):2534-44. Epub 2004 Apr 29.

PMID:
15117752
19.

Theoretical aspects of genomic variation screening using DNA microarrays.

Vainrub A, Pettitt BM.

Biopolymers. 2004 Apr 5;73(5):614-20.

PMID:
15048785
20.

Quantitative analysis of DNA hybridization in a flowthrough microarray for molecular testing.

Mocanu D, Kolesnychenko A, Aarts S, Dejong AT, Pierik A, Coene W, Vossenaar E, Stapert H.

Anal Biochem. 2008 Sep 1;380(1):84-90. doi: 10.1016/j.ab.2008.05.034. Epub 2008 May 27.

PMID:
18555787

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