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Items: 1 to 20 of 303

1.

Genome sequence of the palaeopolyploid soybean.

Schmutz J, Cannon SB, Schlueter J, Ma J, Mitros T, Nelson W, Hyten DL, Song Q, Thelen JJ, Cheng J, Xu D, Hellsten U, May GD, Yu Y, Sakurai T, Umezawa T, Bhattacharyya MK, Sandhu D, Valliyodan B, Lindquist E, Peto M, Grant D, Shu S, Goodstein D, Barry K, Futrell-Griggs M, Abernathy B, Du J, Tian Z, Zhu L, Gill N, Joshi T, Libault M, Sethuraman A, Zhang XC, Shinozaki K, Nguyen HT, Wing RA, Cregan P, Specht J, Grimwood J, Rokhsar D, Stacey G, Shoemaker RC, Jackson SA.

Nature. 2010 Jan 14;463(7278):178-83. doi: 10.1038/nature08670. Erratum in: Nature. 2010 May 6;465(7294):120.

PMID:
20075913
2.

Gene duplication and paleopolyploidy in soybean and the implications for whole genome sequencing.

Schlueter JA, Lin JY, Schlueter SD, Vasylenko-Sanders IF, Deshpande S, Yi J, O'Bleness M, Roe BA, Nelson RT, Scheffler BE, Jackson SA, Shoemaker RC.

BMC Genomics. 2007 Sep 19;8:330.

3.

The lipoxygenase gene family: a genomic fossil of shared polyploidy between Glycine max and Medicago truncatula.

Shin JH, Van K, Kim DH, Kim KD, Jang YE, Choi BS, Kim MY, Lee SH.

BMC Plant Biol. 2008 Dec 23;8:133. doi: 10.1186/1471-2229-8-133.

4.

Highly syntenic regions in the genomes of soybean, Medicago truncatula, and Arabidopsis thaliana.

Mudge J, Cannon SB, Kalo P, Oldroyd GE, Roe BA, Town CD, Young ND.

BMC Plant Biol. 2005 Aug 15;5:15.

5.

Dynamic rearrangements determine genome organization and useful traits in soybean.

Kim KD, Shin JH, Van K, Kim DH, Lee SH.

Plant Physiol. 2009 Nov;151(3):1066-76. doi: 10.1104/pp.109.141739.

6.

Inactivation of duplicated nod factor receptor 5 (NFR5) genes in recessive loss-of-function non-nodulation mutants of allotetraploid soybean (Glycine max L. Merr.).

Indrasumunar A, Kereszt A, Searle I, Miyagi M, Li D, Nguyen CD, Men A, Carroll BJ, Gresshoff PM.

Plant Cell Physiol. 2010 Feb;51(2):201-14. doi: 10.1093/pcp/pcp178.

PMID:
20007291
7.

Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events.

Bowers JE, Chapman BA, Rong J, Paterson AH.

Nature. 2003 Mar 27;422(6930):433-8.

PMID:
12660784
8.

Genome-wide analysis of the MYB transcription factor superfamily in soybean.

Du H, Yang SS, Liang Z, Feng BR, Liu L, Huang YB, Tang YX.

BMC Plant Biol. 2012 Jul 9;12:106. doi: 10.1186/1471-2229-12-106.

9.

Soybean (Glycine max) SWEET gene family: insights through comparative genomics, transcriptome profiling and whole genome re-sequence analysis.

Patil G, Valliyodan B, Deshmukh R, Prince S, Nicander B, Zhao M, Sonah H, Song L, Lin L, Chaudhary J, Liu Y, Joshi T, Xu D, Nguyen HT.

BMC Genomics. 2015 Jul 11;16:520. doi: 10.1186/s12864-015-1730-y.

10.

An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plants.

Libault M, Farmer A, Joshi T, Takahashi K, Langley RJ, Franklin LD, He J, Xu D, May G, Stacey G.

Plant J. 2010 Jul 1;63(1):86-99. doi: 10.1111/j.1365-313X.2010.04222.x.

11.

Evidence for an ancient whole-genome duplication event in rice and other cereals.

Tian CG, Xiong YQ, Liu TY, Sun SH, Chen LB, Chen MS.

Yi Chuan Xue Bao. 2005 May;32(5):519-27.

PMID:
16018264
12.

Differential accumulation of retroelements and diversification of NB-LRR disease resistance genes in duplicated regions following polyploidy in the ancestor of soybean.

Innes RW, Ameline-Torregrosa C, Ashfield T, Cannon E, Cannon SB, Chacko B, Chen NW, Couloux A, Dalwani A, Denny R, Deshpande S, Egan AN, Glover N, Hans CS, Howell S, Ilut D, Jackson S, Lai H, Mammadov J, Del Campo SM, Metcalf M, Nguyen A, O'Bleness M, Pfeil BE, Podicheti R, Ratnaparkhe MB, Samain S, Sanders I, Ségurens B, Sévignac M, Sherman-Broyles S, Thareau V, Tucker DM, Walling J, Wawrzynski A, Yi J, Doyle JJ, Geffroy V, Roe BA, Maroof MA, Young ND.

Plant Physiol. 2008 Dec;148(4):1740-59. doi: 10.1104/pp.108.127902.

13.

Genome-wide comparative analysis of the Brassica rapa gene space reveals genome shrinkage and differential loss of duplicated genes after whole genome triplication.

Mun JH, Kwon SJ, Yang TJ, Seol YJ, Jin M, Kim JA, Lim MH, Kim JS, Baek S, Choi BS, Yu HJ, Kim DS, Kim N, Lim KB, Lee SI, Hahn JH, Lim YP, Bancroft I, Park BS.

Genome Biol. 2009;10(10):R111. doi: 10.1186/gb-2009-10-10-r111.

14.

Use of genomic history to improve phylogeny and understanding of births and deaths in a gene family.

Sampedro J, Lee Y, Carey RE, dePamphilis C, Cosgrove DJ.

Plant J. 2005 Nov;44(3):409-19.

15.

Genome-wide analysis of heat shock transcription factor families in rice and Arabidopsis.

Guo J, Wu J, Ji Q, Wang C, Luo L, Yuan Y, Wang Y, Wang J.

J Genet Genomics. 2008 Feb;35(2):105-18. doi: 10.1016/S1673-8527(08)60016-8.

PMID:
18407058
16.

The Soybean Genome Database (SoyGD): a browser for display of duplicated, polyploid, regions and sequence tagged sites on the integrated physical and genetic maps of Glycine max.

Shultz JL, Kurunam D, Shopinski K, Iqbal MJ, Kazi S, Zobrist K, Bashir R, Yaegashi S, Lavu N, Afzal AJ, Yesudas CR, Kassem MA, Wu C, Zhang HB, Town CD, Meksem K, Lightfoot DA.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D758-65.

17.

The Sorghum bicolor genome and the diversification of grasses.

Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Narechania A, Otillar RP, Penning BW, Salamov AA, Wang Y, Zhang L, Carpita NC, Freeling M, Gingle AR, Hash CT, Keller B, Klein P, Kresovich S, McCann MC, Ming R, Peterson DG, Mehboob-ur-Rahman, Ware D, Westhoff P, Mayer KF, Messing J, Rokhsar DS.

Nature. 2009 Jan 29;457(7229):551-6. doi: 10.1038/nature07723.

PMID:
19189423
18.

Fractionation of synteny in a genomic region containing tandemly duplicated genes across glycine max, Medicago truncatula, and Arabidopsis thaliana.

Schlueter JA, Scheffler BE, Jackson S, Shoemaker RC.

J Hered. 2008 Jul-Aug;99(4):390-5. doi: 10.1093/jhered/esn010.

19.

Changes in twelve homoeologous genomic regions in soybean following three rounds of polyploidy.

Severin AJ, Cannon SB, Graham MM, Grant D, Shoemaker RC.

Plant Cell. 2011 Sep;23(9):3129-36. doi: 10.1105/tpc.111.089573.

20.

Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers.

Varshney RK, Chen W, Li Y, Bharti AK, Saxena RK, Schlueter JA, Donoghue MT, Azam S, Fan G, Whaley AM, Farmer AD, Sheridan J, Iwata A, Tuteja R, Penmetsa RV, Wu W, Upadhyaya HD, Yang SP, Shah T, Saxena KB, Michael T, McCombie WR, Yang B, Zhang G, Yang H, Wang J, Spillane C, Cook DR, May GD, Xu X, Jackson SA.

Nat Biotechnol. 2011 Nov 6;30(1):83-9. doi: 10.1038/nbt.2022.

PMID:
22057054
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