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Items: 1 to 20 of 134

1.

Skittle: a 2-dimensional genome visualization tool.

Seaman JD, Sanford JC.

BMC Bioinformatics. 2009 Dec 30;10:452. doi: 10.1186/1471-2105-10-452.

2.

Pattern locator: a new tool for finding local sequence patterns in genomic DNA sequences.

Mrázek J, Xie S.

Bioinformatics. 2006 Dec 15;22(24):3099-100. Epub 2006 Nov 8.

PMID:
17095514
3.

DiProGB: the dinucleotide properties genome browser.

Friedel M, Nikolajewa S, Sühnel J, Wilhelm T.

Bioinformatics. 2009 Oct 1;25(19):2603-4. doi: 10.1093/bioinformatics/btp436. Epub 2009 Jul 15.

5.

WebACT--an online companion for the Artemis Comparison Tool.

Abbott JC, Aanensen DM, Rutherford K, Butcher S, Spratt BG.

Bioinformatics. 2005 Sep 15;21(18):3665-6. Epub 2005 Aug 2.

PMID:
16076890
6.

Genome visualization made fast and simple.

Gibson R, Smith DR.

Bioinformatics. 2003 Jul 22;19(11):1449-50.

PMID:
12874063
7.

Genomics made easier: an introductory tutorial to genome datamining.

Schattner P.

Genomics. 2009 Mar;93(3):187-95. doi: 10.1016/j.ygeno.2008.10.009. Epub 2008 Dec 5.

8.

Color-coding reveals tandem repeats in the Escherichia coli genome.

Yoshida T, Obata N, Oosawa K.

J Mol Biol. 2000 May 5;298(3):343-9.

PMID:
10772854
9.
10.

SplicePort--an interactive splice-site analysis tool.

Dogan RI, Getoor L, Wilbur WJ, Mount SM.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W285-91. Epub 2007 Jun 18.

11.

WebGMAP: a web service for mapping and aligning cDNA sequences to genomes.

Liang C, Liu L, Ji G.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W77-83. doi: 10.1093/nar/gkp389. Epub 2009 May 22.

12.

GeneTools--application for functional annotation and statistical hypothesis testing.

Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

BMC Bioinformatics. 2006 Oct 24;7:470.

13.

Multiple alignment of genomic sequences using CHAOS, DIALIGN and ABC.

Pöhler D, Werner N, Steinkamp R, Morgenstern B.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W532-4.

14.

mreps: Efficient and flexible detection of tandem repeats in DNA.

Kolpakov R, Bana G, Kucherov G.

Nucleic Acids Res. 2003 Jul 1;31(13):3672-8.

15.

BWtrs: A tool for searching for tandem repeats in DNA sequences based on the Burrows-Wheeler transform.

Pokrzywa R, Polanski A.

Genomics. 2010 Nov;96(5):316-21. doi: 10.1016/j.ygeno.2010.08.001. Epub 2010 Aug 13.

16.

Theatre: A software tool for detailed comparative analysis and visualization of genomic sequence.

Edwards YJ, Carver TJ, Vavouri T, Frith M, Bishop MJ, Elgar G.

Nucleic Acids Res. 2003 Jul 1;31(13):3510-7.

17.

VIRS: A visual tool for identifying restriction sites in multiple DNA sequences.

Chen X, Luo C, Ma X, Chen M.

Biotechnol Prog. 2009 Sep-Oct;25(5):1525-7. doi: 10.1002/btpr.259.

PMID:
19637395
18.
19.

BOV--a web-based BLAST output visualization tool.

Gollapudi R, Revanna KV, Hemmerich C, Schaack S, Dong Q.

BMC Genomics. 2008 Sep 15;9:414. doi: 10.1186/1471-2164-9-414.

20.

Lightweight genome viewer: portable software for browsing genomics data in its chromosomal context.

Faith JJ, Olson AJ, Gardner TS, Sachidanandam R.

BMC Bioinformatics. 2007 Sep 18;8:344.

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