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Items: 1 to 20 of 77

1.

A native chromatin purification system for epigenomic profiling in Caenorhabditis elegans.

Ooi SL, Henikoff JG, Henikoff S.

Nucleic Acids Res. 2010 Mar;38(4):e26. doi: 10.1093/nar/gkp1090. Epub 2009 Dec 4.

2.

Genome-wide profiling of salt fractions maps physical properties of chromatin.

Henikoff S, Henikoff JG, Sakai A, Loeb GB, Ahmad K.

Genome Res. 2009 Mar;19(3):460-9. doi: 10.1101/gr.087619.108. Epub 2008 Dec 16.

3.

Cell-type-specific nuclei purification from whole animals for genome-wide expression and chromatin profiling.

Steiner FA, Talbert PB, Kasinathan S, Deal RB, Henikoff S.

Genome Res. 2012 Apr;22(4):766-77. doi: 10.1101/gr.131748.111. Epub 2012 Jan 4.

4.

Epigenetic patterns maintained in early Caenorhabditis elegans embryos can be established by gene activity in the parental germ cells.

Arico JK, Katz DJ, van der Vlag J, Kelly WG.

PLoS Genet. 2011 Jun;7(6):e1001391. doi: 10.1371/journal.pgen.1001391. Epub 2011 Jun 9.

5.

Distributed probing of chromatin structure in vivo reveals pervasive chromatin accessibility for expressed and non-expressed genes during tissue differentiation in C. elegans.

Sha K, Gu SG, Pantalena-Filho LC, Goh A, Fleenor J, Blanchard D, Krishna C, Fire A.

BMC Genomics. 2010 Aug 6;11:465. doi: 10.1186/1471-2164-11-465.

6.

Isolation of transcription factor complexes by in vivo biotinylation tagging and direct binding to streptavidin beads.

Rodriguez P, Braun H, Kolodziej KE, de Boer E, Campbell J, Bonte E, Grosveld F, Philipsen S, Strouboulis J.

Methods Mol Biol. 2006;338:305-23.

PMID:
16888367
7.
8.

Genome-scale profiling of histone H3.3 replacement patterns.

Mito Y, Henikoff JG, Henikoff S.

Nat Genet. 2005 Oct;37(10):1090-7. Epub 2005 Sep 11.

PMID:
16155569
9.

Transcriptome analysis for Caenorhabditis elegans based on novel expressed sequence tags.

Shin H, Hirst M, Bainbridge MN, Magrini V, Mardis E, Moerman DG, Marra MA, Baillie DL, Jones SJ.

BMC Biol. 2008 Jul 8;6:30. doi: 10.1186/1741-7007-6-30.

10.
11.

A distinct epigenetic signature at targets of a leukemia protein.

Rossetti S, Hoogeveen AT, Liang P, Stanciu C, van der Spek P, Sacchi N.

BMC Genomics. 2007 Feb 1;8:38.

12.

DNA-binding specificity and in vivo targets of Caenorhabditis elegans nuclear factor I.

Whittle CM, Lazakovitch E, Gronostajski RM, Lieb JD.

Proc Natl Acad Sci U S A. 2009 Jul 21;106(29):12049-54. doi: 10.1073/pnas.0812894106. Epub 2009 Jul 7. Erratum in: Proc Natl Acad Sci U S A. 2009 Sep 8;106(36):15514.

13.

Complementary RNA amplification methods enhance microarray identification of transcripts expressed in the C. elegans nervous system.

Watson JD, Wang S, Von Stetina SE, Spencer WC, Levy S, Dexheimer PJ, Kurn N, Heath JD, Miller DM 3rd.

BMC Genomics. 2008 Feb 19;9:84. doi: 10.1186/1471-2164-9-84.

14.

Functional exploration of the C. elegans genome using DNA microarrays.

Reinke V.

Nat Genet. 2002 Dec;32 Suppl:541-6. Review.

PMID:
12454651
15.

Genome-scale identification of Caenorhabditis elegans regulatory elements by tiling-array mapping of DNase I hypersensitive sites.

Shi B, Guo X, Wu T, Sheng S, Wang J, Skogerbø G, Zhu X, Chen R.

BMC Genomics. 2009 Feb 25;10:92. doi: 10.1186/1471-2164-10-92.

16.

In vivo site-specific biotinylation of proteins within the secretory pathway using a single vector system.

Predonzani A, Arnoldi F, López-Requena A, Burrone OR.

BMC Biotechnol. 2008 Apr 18;8:41. doi: 10.1186/1472-6750-8-41.

17.

Epigenetic regulation of chromatin structure and gene function by biotin.

Hassan YI, Zempleni J.

J Nutr. 2006 Jul;136(7):1763-5. Review.

18.

Automated lineage and expression profiling in live Caenorhabditis elegans embryos.

Murray JI, Bao Z.

Cold Spring Harb Protoc. 2012 Aug 1;2012(8). pii: pdb.prot070615. doi: 10.1101/pdb.prot070615.

PMID:
22854571
19.

[Genome-wide analyses of gene expression and function in C. elegans].

Sugimoto A, Kohara Y.

Tanpakushitsu Kakusan Koso. 2005 Dec;50(16 Suppl):2140-5. Review. Japanese. No abstract available.

PMID:
16411443
20.

The comprehensive transcriptional analysis in Caenorhabditis elegans by integrating ChIP-seq and gene expression data.

He K, Shao J, Zhao Z, Liu D.

Genet Res (Camb). 2014;96:e005. doi: 10.1017/S0016672314000081.

PMID:
25023089

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