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Items: 1 to 20 of 154

1.

Tablet--next generation sequence assembly visualization.

Milne I, Bayer M, Cardle L, Shaw P, Stephen G, Wright F, Marshall D.

Bioinformatics. 2010 Feb 1;26(3):401-2. doi: 10.1093/bioinformatics/btp666. Epub 2009 Dec 4.

2.

Using Tablet for visual exploration of second-generation sequencing data.

Milne I, Stephen G, Bayer M, Cock PJ, Pritchard L, Cardle L, Shaw PD, Marshall D.

Brief Bioinform. 2013 Mar;14(2):193-202. doi: 10.1093/bib/bbs012. Epub 2012 Mar 24.

PMID:
22445902
3.

Comparative visualization of genetic and physical maps with Strudel.

Bayer M, Milne I, Stephen G, Shaw P, Cardle L, Wright F, Marshall D.

Bioinformatics. 2011 May 1;27(9):1307-8. doi: 10.1093/bioinformatics/btr111. Epub 2011 Mar 3.

4.

Geneious Basic: an integrated and extendable desktop software platform for the organization and analysis of sequence data.

Kearse M, Moir R, Wilson A, Stones-Havas S, Cheung M, Sturrock S, Buxton S, Cooper A, Markowitz S, Duran C, Thierer T, Ashton B, Meintjes P, Drummond A.

Bioinformatics. 2012 Jun 15;28(12):1647-9. doi: 10.1093/bioinformatics/bts199. Epub 2012 Apr 27.

5.

dCAS: a desktop application for cDNA sequence annotation.

Guo Y, Ribeiro JM, Anderson JM, Bour S.

Bioinformatics. 2009 May 1;25(9):1195-6. doi: 10.1093/bioinformatics/btp129. Epub 2009 Mar 24.

6.

GenomeDiagram: a python package for the visualization of large-scale genomic data.

Pritchard L, White JA, Birch PR, Toth IK.

Bioinformatics. 2006 Mar 1;22(5):616-7. Epub 2005 Dec 23.

PMID:
16377612
7.

Flapjack--graphical genotype visualization.

Milne I, Shaw P, Stephen G, Bayer M, Cardle L, Thomas WT, Flavell AJ, Marshall D.

Bioinformatics. 2010 Dec 15;26(24):3133-4. doi: 10.1093/bioinformatics/btq580. Epub 2010 Oct 18.

8.

ZOOM Lite: next-generation sequencing data mapping and visualization software.

Zhang Z, Lin H, Ma B.

Nucleic Acids Res. 2010 Jul;38(Web Server issue):W743-8. doi: 10.1093/nar/gkq538. Epub 2010 Jun 8.

9.

GenAlyzer: interactive visualization of sequence similarities between entire genomes.

Choudhuri JV, Schleiermacher C, Kurtz S, Giegerich R.

Bioinformatics. 2004 Aug 12;20(12):1964-5. Epub 2004 Feb 26.

PMID:
14988113
10.

NAViGaTOR: Network Analysis, Visualization and Graphing Toronto.

Brown KR, Otasek D, Ali M, McGuffin MJ, Xie W, Devani B, Toch IL, Jurisica I.

Bioinformatics. 2009 Dec 15;25(24):3327-9. doi: 10.1093/bioinformatics/btp595. Epub 2009 Oct 16.

11.

Windows .NET Network Distributed Basic Local Alignment Search Toolkit (W.ND-BLAST).

Dowd SE, Zaragoza J, Rodriguez JR, Oliver MJ, Payton PR.

BMC Bioinformatics. 2005 Apr 8;6:93.

12.

SNVerGUI: a desktop tool for variant analysis of next-generation sequencing data.

Wang W, Hu W, Hou F, Hu P, Wei Z.

J Med Genet. 2012 Dec;49(12):753-5. doi: 10.1136/jmedgenet-2012-101001. Epub 2012 Sep 28.

PMID:
23024288
13.

EagleView: a genome assembly viewer for next-generation sequencing technologies.

Huang W, Marth G.

Genome Res. 2008 Sep;18(9):1538-43. doi: 10.1101/gr.076067.108. Epub 2008 Jun 11.

14.

MapView: visualization of short reads alignment on a desktop computer.

Bao H, Guo H, Wang J, Zhou R, Lu X, Shi S.

Bioinformatics. 2009 Jun 15;25(12):1554-5. doi: 10.1093/bioinformatics/btp255. Epub 2009 Apr 15.

PMID:
19369497
15.

iMotifs: an integrated sequence motif visualization and analysis environment.

Piipari M, Down TA, Saini H, Enright A, Hubbard TJ.

Bioinformatics. 2010 Mar 15;26(6):843-4. doi: 10.1093/bioinformatics/btq026. Epub 2010 Jan 26.

16.

WebACT--an online companion for the Artemis Comparison Tool.

Abbott JC, Aanensen DM, Rutherford K, Butcher S, Spratt BG.

Bioinformatics. 2005 Sep 15;21(18):3665-6. Epub 2005 Aug 2.

PMID:
16076890
17.

Rainbow: a toolbox for phylogenetic supertree construction and analysis.

Chen D, Eulenstein O, Fernández-Baca D.

Bioinformatics. 2004 Nov 1;20(16):2872-3. Epub 2004 May 14.

PMID:
15145807
18.

Unipro UGENE: a unified bioinformatics toolkit.

Okonechnikov K, Golosova O, Fursov M; UGENE team.

Bioinformatics. 2012 Apr 15;28(8):1166-7. doi: 10.1093/bioinformatics/bts091. Epub 2012 Feb 24.

PMID:
22368248
19.

Combo: a whole genome comparative browser.

Engels R, Yu T, Burge C, Mesirov JP, DeCaprio D, Galagan JE.

Bioinformatics. 2006 Jul 15;22(14):1782-3. Epub 2006 May 18.

PMID:
16709588
20.

DiProGB: the dinucleotide properties genome browser.

Friedel M, Nikolajewa S, Sühnel J, Wilhelm T.

Bioinformatics. 2009 Oct 1;25(19):2603-4. doi: 10.1093/bioinformatics/btp436. Epub 2009 Jul 15.

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