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Items: 1 to 20 of 207

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Finding a (pine) needle in a haystack: chloroplast genome sequence divergence in rare and widespread pines.

Whittall JB, Syring J, Parks M, Buenrostro J, Dick C, Liston A, Cronn R.

Mol Ecol. 2010 Mar;19 Suppl 1:100-14. doi: 10.1111/j.1365-294X.2009.04474.x.

PMID:
20331774
4.

Separating the wheat from the chaff: mitigating the effects of noise in a plastome phylogenomic data set from Pinus L. (Pinaceae).

Parks M, Cronn R, Liston A.

BMC Evol Biol. 2012 Jun 25;12:100. doi: 10.1186/1471-2148-12-100.

5.

Genetic, morphological, geographical and ecological approaches reveal phylogenetic relationships in complex groups, an example of recently diverged pinyon pine species (Subsection Cembroides).

Flores-Rentería L, Wegier A, Ortega Del Vecchyo D, Ortíz-Medrano A, Piñero D, Whipple AV, Molina-Freaner F, Domínguez CA.

Mol Phylogenet Evol. 2013 Dec;69(3):940-9. doi: 10.1016/j.ympev.2013.06.010. Epub 2013 Jul 2.

PMID:
23831459
6.

Complete sequencing and comparative analyses of the pepper (Capsicum annuum L.) plastome revealed high frequency of tandem repeats and large insertion/deletions on pepper plastome.

Jo YD, Park J, Kim J, Song W, Hur CG, Lee YH, Kang BC.

Plant Cell Rep. 2011 Feb;30(2):217-29. doi: 10.1007/s00299-010-0929-2. Epub 2010 Oct 27.

PMID:
20978766
7.

Highly variable chloroplast markers for evaluating plant phylogeny at low taxonomic levels and for DNA barcoding.

Dong W, Liu J, Yu J, Wang L, Zhou S.

PLoS One. 2012;7(4):e35071. doi: 10.1371/journal.pone.0035071. Epub 2012 Apr 12.

8.

Integration of complete chloroplast genome sequences with small amplicon datasets improves phylogenetic resolution in Acacia.

Williams AV, Miller JT, Small I, Nevill PG, Boykin LM.

Mol Phylogenet Evol. 2016 Mar;96:1-8. doi: 10.1016/j.ympev.2015.11.021. Epub 2015 Dec 15.

PMID:
26702955
9.

Complete chloroplast genome sequence of Magnolia kwangsiensis (Magnoliaceae): implication for DNA barcoding and population genetics.

Kuang DY, Wu H, Wang YL, Gao LM, Zhang SZ, Lu L.

Genome. 2011 Aug;54(8):663-73. doi: 10.1139/G11-026. Epub 2011 Jul 27.

PMID:
21793699
10.

Chloroplast genome sequences from total DNA for plant identification.

Nock CJ, Waters DL, Edwards MA, Bowen SG, Rice N, Cordeiro GM, Henry RJ.

Plant Biotechnol J. 2011 Apr;9(3):328-33. doi: 10.1111/j.1467-7652.2010.00558.x. Epub 2010 Aug 27.

11.

High-throughput sequencing of six bamboo chloroplast genomes: phylogenetic implications for temperate woody bamboos (Poaceae: Bambusoideae).

Zhang YJ, Ma PF, Li DZ.

PLoS One. 2011;6(5):e20596. doi: 10.1371/journal.pone.0020596. Epub 2011 May 31.

13.

Chloroplast phylogenomic analyses resolve deep-level relationships of an intractable bamboo tribe Arundinarieae (poaceae).

Ma PF, Zhang YX, Zeng CX, Guo ZH, Li DZ.

Syst Biol. 2014 Nov;63(6):933-50. doi: 10.1093/sysbio/syu054. Epub 2014 Aug 4.

PMID:
25092479
14.

Chloroplast genomes as a tool to resolve red algal phylogenies: a case study in the Nemaliales.

F Costa J, Lin SM, Macaya EC, Fernández-García C, Verbruggen H.

BMC Evol Biol. 2016 Oct 10;16(1):205.

15.

Identifying the basal angiosperm node in chloroplast genome phylogenies: sampling one's way out of the Felsenstein zone.

Leebens-Mack J, Raubeson LA, Cui L, Kuehl JV, Fourcade MH, Chumley TW, Boore JL, Jansen RK, depamphilis CW.

Mol Biol Evol. 2005 Oct;22(10):1948-63. Epub 2005 Jun 8.

PMID:
15944438
16.

Complete sequencing of five araliaceae chloroplast genomes and the phylogenetic implications.

Li R, Ma PF, Wen J, Yi TS.

PLoS One. 2013 Oct 18;8(10):e78568. doi: 10.1371/journal.pone.0078568. eCollection 2013.

17.

The complete plastid genome sequence of Welwitschia mirabilis: an unusually compact plastome with accelerated divergence rates.

McCoy SR, Kuehl JV, Boore JL, Raubeson LA.

BMC Evol Biol. 2008 May 1;8:130. doi: 10.1186/1471-2148-8-130.

18.

Next-generation technologies to determine plastid genome sequences.

Henry RJ, Rice N, Edwards M, Nock CJ.

Methods Mol Biol. 2014;1132:39-46. doi: 10.1007/978-1-62703-995-6_2.

PMID:
24599845
19.

Rapid sequencing of the bamboo mitochondrial genome using Illumina technology and parallel episodic evolution of organelle genomes in grasses.

Ma PF, Guo ZH, Li DZ.

PLoS One. 2012;7(1):e30297. doi: 10.1371/journal.pone.0030297. Epub 2012 Jan 17.

20.

Chloroplast phylogenomic data from the green algal order Sphaeropleales (Chlorophyceae, Chlorophyta) reveal complex patterns of sequence evolution.

Fučíková K, Lewis PO, Lewis LA.

Mol Phylogenet Evol. 2016 May;98:176-83. doi: 10.1016/j.ympev.2016.01.022. Epub 2016 Feb 20.

PMID:
26903036

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