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Items: 1 to 20 of 225

1.

Detailed analysis of a contiguous 22-Mb region of the maize genome.

Wei F, Stein JC, Liang C, Zhang J, Fulton RS, Baucom RS, De Paoli E, Zhou S, Yang L, Han Y, Pasternak S, Narechania A, Zhang L, Yeh CT, Ying K, Nagel DH, Collura K, Kudrna D, Currie J, Lin J, Kim H, Angelova A, Scara G, Wissotski M, Golser W, Courtney L, Kruchowski S, Graves TA, Rock SM, Adams S, Fulton LA, Fronick C, Courtney W, Kramer M, Spiegel L, Nascimento L, Kalyanaraman A, Chaparro C, Deragon JM, Miguel PS, Jiang N, Wessler SR, Green PJ, Yu Y, Schwartz DC, Meyers BC, Bennetzen JL, Martienssen RA, McCombie WR, Aluru S, Clifton SW, Schnable PS, Ware D, Wilson RK, Wing RA.

PLoS Genet. 2009 Nov;5(11):e1000728. doi: 10.1371/journal.pgen.1000728. Epub 2009 Nov 20.

2.
3.

The physical and genetic framework of the maize B73 genome.

Wei F, Zhang J, Zhou S, He R, Schaeffer M, Collura K, Kudrna D, Faga BP, Wissotski M, Golser W, Rock SM, Graves TA, Fulton RS, Coe E, Schnable PS, Schwartz DC, Ware D, Clifton SW, Wilson RK, Wing RA.

PLoS Genet. 2009 Nov;5(11):e1000715. doi: 10.1371/journal.pgen.1000715. Epub 2009 Nov 20.

4.
5.

Computational finishing of large sequence contigs reveals interspersed nested repeats and gene islands in the rf1-associated region of maize.

Kronmiller BA, Wise RP.

Plant Physiol. 2009 Oct;151(2):483-95. doi: 10.1104/pp.109.143370. Epub 2009 Aug 12.

6.

Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged grass species.

Buell CR, Yuan Q, Ouyang S, Liu J, Zhu W, Wang A, Maiti R, Haas B, Wortman J, Pertea M, Jones KM, Kim M, Overton L, Tsitrin T, Fadrosh D, Bera J, Weaver B, Jin S, Johri S, Reardon M, Webb K, Hill J, Moffat K, Tallon L, Van Aken S, Lewis M, Utterback T, Feldblyum T, Zismann V, Iobst S, Hsiao J, de Vazeille AR, Salzberg SL, White O, Fraser C, Yu Y, Kim H, Rambo T, Currie J, Collura K, Kernodle-Thompson S, Wei F, Kudrna K, Ammiraju JS, Luo M, Goicoechea JL, Wing RA, Henry D, Oates R, Palmer M, Pries G, Saski C, Simmons J, Soderlund C, Nelson W, de la Bastide M, Spiegel L, Nascimento L, Huang E, Preston R, Zutavern T, Palmer L, O'Shaughnessy A, Dike S, McCombie WR, Minx P, Cordum H, Wilson R, Jin W, Lee HR, Jiang J, Jackson S; Rice Chromosome 3 Sequencing Consortium.

Genome Res. 2005 Sep;15(9):1284-91. Epub 2005 Aug 18.

7.

Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.

Soderlund C, Descour A, Kudrna D, Bomhoff M, Boyd L, Currie J, Angelova A, Collura K, Wissotski M, Ashley E, Morrow D, Fernandes J, Walbot V, Yu Y.

PLoS Genet. 2009 Nov;5(11):e1000740. doi: 10.1371/journal.pgen.1000740. Epub 2009 Nov 20.

8.

Sequence and comparative analysis of the maize NB mitochondrial genome.

Clifton SW, Minx P, Fauron CM, Gibson M, Allen JO, Sun H, Thompson M, Barbazuk WB, Kanuganti S, Tayloe C, Meyer L, Wilson RK, Newton KJ.

Plant Physiol. 2004 Nov;136(3):3486-503.

9.

A genome-wide characterization of microRNA genes in maize.

Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D.

PLoS Genet. 2009 Nov;5(11):e1000716. doi: 10.1371/journal.pgen.1000716. Epub 2009 Nov 20.

10.

New in silico insight into the synteny between rice (Oryza sativa L.) and maize (Zea mays L.) highlights reshuffling and identifies new duplications in the rice genome.

Salse J, Piégu B, Cooke R, Delseny M.

Plant J. 2004 May;38(3):396-409. Erratum in: Plant J. 2004 Jun;38(5):873.

11.

A complex history of rearrangement in an orthologous region of the maize, sorghum, and rice genomes.

Ilic K, SanMiguel PJ, Bennetzen JL.

Proc Natl Acad Sci U S A. 2003 Oct 14;100(21):12265-70. Epub 2003 Oct 6.

12.

Exceptional diversity, non-random distribution, and rapid evolution of retroelements in the B73 maize genome.

Baucom RS, Estill JC, Chaparro C, Upshaw N, Jogi A, Deragon JM, Westerman RP, Sanmiguel PJ, Bennetzen JL.

PLoS Genet. 2009 Nov;5(11):e1000732. doi: 10.1371/journal.pgen.1000732. Epub 2009 Nov 20.

13.

The Sorghum bicolor genome and the diversification of grasses.

Paterson AH, Bowers JE, Bruggmann R, Dubchak I, Grimwood J, Gundlach H, Haberer G, Hellsten U, Mitros T, Poliakov A, Schmutz J, Spannagl M, Tang H, Wang X, Wicker T, Bharti AK, Chapman J, Feltus FA, Gowik U, Grigoriev IV, Lyons E, Maher CA, Martis M, Narechania A, Otillar RP, Penning BW, Salamov AA, Wang Y, Zhang L, Carpita NC, Freeling M, Gingle AR, Hash CT, Keller B, Klein P, Kresovich S, McCann MC, Ming R, Peterson DG, Mehboob-ur-Rahman, Ware D, Westhoff P, Mayer KF, Messing J, Rokhsar DS.

Nature. 2009 Jan 29;457(7229):551-6. doi: 10.1038/nature07723.

PMID:
19189423
14.

Uneven chromosome contraction and expansion in the maize genome.

Bruggmann R, Bharti AK, Gundlach H, Lai J, Young S, Pontaroli AC, Wei F, Haberer G, Fuks G, Du C, Raymond C, Estep MC, Liu R, Bennetzen JL, Chan AP, Rabinowicz PD, Quackenbush J, Barbazuk WB, Wing RA, Birren B, Nusbaum C, Rounsley S, Mayer KF, Messing J.

Genome Res. 2006 Oct;16(10):1241-51. Epub 2006 Aug 10.

15.

Structure and evolution of the r/b chromosomal regions in rice, maize and sorghum.

Swigonov√° Z, Bennetzen JL, Messing J.

Genetics. 2005 Feb;169(2):891-906. Epub 2004 Oct 16.

16.

Insights into the bamboo genome: syntenic relationships to rice and sorghum.

Gui YJ, Zhou Y, Wang Y, Wang S, Wang SY, Hu Y, Bo SP, Chen H, Zhou CP, Ma NX, Zhang TZ, Fan LJ.

J Integr Plant Biol. 2010 Nov;52(11):1008-15. doi: 10.1111/j.1744-7909.2010.00965.x.

PMID:
20977658
17.

Insights into the Musa genome: syntenic relationships to rice and between Musa species.

Lescot M, Piffanelli P, Ciampi AY, Ruiz M, Blanc G, Leebens-Mack J, da Silva FR, Santos CM, D'Hont A, Garsmeur O, Vilarinhos AD, Kanamori H, Matsumoto T, Ronning CM, Cheung F, Haas BJ, Althoff R, Arbogast T, Hine E, Pappas GJ Jr, Sasaki T, Souza MT Jr, Miller RN, Glaszmann JC, Town CD.

BMC Genomics. 2008 Jan 30;9:58. doi: 10.1186/1471-2164-9-58.

18.
19.

DNA rearrangement in orthologous orp regions of the maize, rice and sorghum genomes.

Ma J, SanMiguel P, Lai J, Messing J, Bennetzen JL.

Genetics. 2005 Jul;170(3):1209-20. Epub 2005 Apr 16.

20.

B chromosome contains active genes and impacts the transcription of A chromosomes in maize (Zea mays L.).

Huang W, Du Y, Zhao X, Jin W.

BMC Plant Biol. 2016 Apr 16;16:88. doi: 10.1186/s12870-016-0775-7.

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