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Items: 1 to 20 of 83

1.

Recurated protein interaction datasets.

Salwinski L, Licata L, Winter A, Thorneycroft D, Khadake J, Ceol A, Aryamontri AC, Oughtred R, Livstone M, Boucher L, Botstein D, Dolinski K, Berardini T, Huala E, Tyers M, Eisenberg D, Cesareni G, Hermjakob H.

Nat Methods. 2009 Dec;6(12):860-1. doi: 10.1038/nmeth1209-860. No abstract available.

PMID:
19935838
2.

AtPIN: Arabidopsis thaliana protein interaction network.

Brandão MM, Dantas LL, Silva-Filho MC.

BMC Bioinformatics. 2009 Dec 31;10:454. doi: 10.1186/1471-2105-10-454.

3.

DATF: a database of Arabidopsis transcription factors.

Guo A, He K, Liu D, Bai S, Gu X, Wei L, Luo J.

Bioinformatics. 2005 May 15;21(10):2568-9. Epub 2005 Feb 24.

PMID:
15731212
4.

PPDB, the Plant Proteomics Database at Cornell.

Sun Q, Zybailov B, Majeran W, Friso G, Olinares PD, van Wijk KJ.

Nucleic Acids Res. 2009 Jan;37(Database issue):D969-74. doi: 10.1093/nar/gkn654. Epub 2008 Oct 2.

5.

Functional bioinformatics for Arabidopsis thaliana.

Clare A, Karwath A, Ougham H, King RD.

Bioinformatics. 2006 May 1;22(9):1130-6. Epub 2006 Feb 15. Erratum in: Bioinformatics. 2006 Jul 1;22(13):1674.

PMID:
16481336
6.

The plant-specific database. Classification of Arabidopsis proteins based on their phylogenetic profile.

Gutiérrez RA, Larson MD, Wilkerson C.

Plant Physiol. 2004 Aug;135(4):1888-92. No abstract available.

7.

Genome-wide identification of Arabidopsis coiled-coil proteins and establishment of the ARABI-COIL database.

Rose A, Manikantan S, Schraegle SJ, Maloy MA, Stahlberg EA, Meier I.

Plant Physiol. 2004 Mar;134(3):927-39.

8.

AMPDB: the Arabidopsis Mitochondrial Protein Database.

Heazlewood JL, Millar AH.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D605-10.

9.

Arabidopsis thaliana proteomics: from proteome to genome.

Baginsky S, Gruissem W.

J Exp Bot. 2006;57(7):1485-91. Epub 2006 Mar 21. Review.

PMID:
16551684
10.

The multinational Arabidopsis steering subcommittee for proteomics assembles the largest proteome database resource for plant systems biology.

Weckwerth W, Baginsky S, van Wijk K, Heazlewood JL, Millar H.

J Proteome Res. 2008 Oct;7(10):4209-10. doi: 10.1021/pr800480u. Epub 2008 Sep 12. No abstract available.

PMID:
18785769
11.

Identification and characterization of AtI-2, an Arabidopsis homologue of an ancient protein phosphatase 1 (PP1) regulatory subunit.

Templeton GW, Nimick M, Morrice N, Campbell D, Goudreault M, Gingras AC, Takemiya A, Shimazaki K, Moorhead GB.

Biochem J. 2011 Apr 1;435(1):73-83. doi: 10.1042/BJ20101035.

PMID:
21222654
12.

Combining experimental and predicted datasets for determination of the subcellular location of proteins in Arabidopsis.

Heazlewood JL, Tonti-Filippini J, Verboom RE, Millar AH.

Plant Physiol. 2005 Oct;139(2):598-609.

13.

Putative microtubule-associated proteins from the Arabidopsis genome.

Gardiner J, Marc J.

Protoplasma. 2003 Sep;222(1-2):61-74.

PMID:
14513312
14.

The Arabidopsis thaliana genome contains at least 29 active genes encoding SET domain proteins that can be assigned to four evolutionarily conserved classes.

Baumbusch LO, Thorstensen T, Krauss V, Fischer A, Naumann K, Assalkhou R, Schulz I, Reuter G, Aalen RB.

Nucleic Acids Res. 2001 Nov 1;29(21):4319-33.

15.

Identification and characterization of a proteolysis-resistant fragment containing the PCI domain in the Arabidopsis thaliana INT6/eIF3e translation factor.

Murai MJ, Carneiro FR, Gozzo FC, Ierardi DF, Pertinhez TA, Zanchin NI.

Cell Biochem Biophys. 2006;44(3):522-9.

PMID:
16679540
16.

Arabidopsis nucleolar protein database (AtNoPDB).

Brown JW, Shaw PJ, Shaw P, Marshall DF.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D633-6.

17.

AtPID: Arabidopsis thaliana protein interactome database--an integrative platform for plant systems biology.

Cui J, Li P, Li G, Xu F, Zhao C, Li Y, Yang Z, Wang G, Yu Q, Li Y, Shi T.

Nucleic Acids Res. 2008 Jan;36(Database issue):D999-1008. Epub 2007 Oct 25.

18.

Analysis of EF-hand-containing proteins in Arabidopsis.

Day IS, Reddy VS, Shad Ali G, Reddy AS.

Genome Biol. 2002 Sep 23;3(10):RESEARCH0056. Epub 2002 Sep 23.

19.

Sequence motifs in MADS transcription factors responsible for specificity and diversification of protein-protein interaction.

van Dijk AD, Morabito G, Fiers M, van Ham RC, Angenent GC, Immink RG.

PLoS Comput Biol. 2010 Nov 24;6(11):e1001017. doi: 10.1371/journal.pcbi.1001017.

20.

A new principle of oligomerization of plant DEG7 protease based on interactions of degenerated protease domains.

Schuhmann H, Mogg U, Adamska I.

Biochem J. 2011 Apr 1;435(1):167-74. doi: 10.1042/BJ20101613.

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